Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02222 ATGGGAACATCTTCACGTTTGATGATTCTCCTTCTCCTTGTTTCCATCTTTGCATCATCGCATTATTCCAATGCATACCCTTTATCAACTCAGAAAAGATGGATCATAGATGATGCGACAGGGCAACGTGCAAAGTTGGTGTGTGGGAACTGGGCTGGTCACCTCAGACCAATGATCCCTGAGGGCTTAGACAGAAGGCCCTTGAAGGAGATCGTTGGTGAGCTTGTGGACCTCAACTTCAACTGTGTTCGTCTCACCTATGCAATCTACATGTGGACACGTTATGGCCATGGCAACGTGAATGCCACCTTTGCATCCTTGGATGCACCAAAGGTGGTGGAAGGCATAGCCATGCACAACCCTTCTGTGTTGGCCAAGACTCACATTCAGGTCTTTGAGGATGTGGTTCGTGAACTTGGGGCTCAGAATGTGAAGGTGTTGCTTGATAACCATGTGAGTCAGCCTAAGTGGTGCTGTAATGATGATGATGAGAATGGCTTCTTCCATGATAGGCACTTTGATCCTCAGGAATGGGTGCATGGCCTTACTTTGGCAGCCAAACACTTCAGTGGAAATCATGCTGTTGTGGCAATGAGTTTGAGAAATGAATTGCATGGTCCACGCCAAAATCTGCGTGATTGGTACAAGTACATGAGCGAAGGAGCGCTAGCCATACACAAGGAAAACCCGAACGTGCTTGTGCTTATATCAGGTTTGAACTACGACACTGAGTTGCAGTTTCTAAAGAGTAAACCGTTGAAGATAGACTTGGGTAAGAAAATGGTGTTTGAGACACACTTGTACTCATGGTCTGGAATTGGGACACTCAAGTTGAAAGAGATATGGACAAAGCAACCATTGAACAGGATATGTGCCAATAACATTAAGGGGATAGACCACAGAGCTGGGTTCCTTACCACTGGTGAGAAAGCAACTCCTTTGATCTTTACTGAGTTTGGGTTTAATGAGGAAGGTGCTTCAGTGGAAGATAACAGGTTCTTGACATGCCTTCAAACCTATCTTGTTGGAAGAGACATGGATTGGGGTTTGTGGGCATTTCATAGTAGCTACTATGTTAAACATGACACGGTTCAACTTGACGAGTCATTTGGTGTAATGGATCAGACTTGGCATCACCTGAGAGACCCCAACTTCACTTCCAAGTTCCAACTTTTGCAAAGGAAGAATCAAGAACCTACCTCTAAGGCCCCCCTTGTAAATATCTTGTACTACCCTCTAACTGGTCATTGTGTCCAAGTGAATGACAAGAATGAACTTGAACTTGGTAGCTGTGAGAACAAAAACAGATGGGTTCATGGTGGAAAAGGGACTCAAATCCTTCTACATGGAACAAAGAAGTGCTTAACCGCGCCCGGAGAAGGGCATCCAGTTGTTGTTTCTGATGACTGCCAAAGCAAAACTAGCTCTTGGAAGCCTGAGTCACTGTCTAAACTTCACTTGGCCACTGTGGATCAACATGGGAAGCAACTTTGCTTAGAAAAGGATTCCAACTCATCCAGCATTGTGACCTCAAAATGTATCTGCATAAATGATGATTCTCTATGTCTTGATGATCCCCGAAGCCAATGGTTCCAGCTTGTTGCCGCCAATGTGTAG 1617 0.4502 MGTSSRLMILLLLVSIFASSHYSNAYPLSTQKRWIIDDATGQRAKLVCGNWAGHLRPMIPEGLDRRPLKEIVGELVDLNFNCVRLTYAIYMWTRYGHGNVNATFASLDAPKVVEGIAMHNPSVLAKTHIQVFEDVVRELGAQNVKVLLDNHVSQPKWCCNDDDENGFFHDRHFDPQEWVHGLTLAAKHFSGNHAVVAMSLRNELHGPRQNLRDWYKYMSEGALAIHKENPNVLVLISGLNYDTELQFLKSKPLKIDLGKKMVFETHLYSWSGIGTLKLKEIWTKQPLNRICANNIKGIDHRAGFLTTGEKATPLIFTEFGFNEEGASVEDNRFLTCLQTYLVGRDMDWGLWAFHSSYYVKHDTVQLDESFGVMDQTWHHLRDPNFTSKFQLLQRKNQEPTSKAPLVNILYYPLTGHCVQVNDKNELELGSCENKNRWVHGGKGTQILLHGTKKCLTAPGEGHPVVVSDDCQSKTSSWKPESLSKLHLATVDQHGKQLCLEKDSNSSSIVTSKCICINDDSLCLDDPRSQWFQLVAANV 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02222 538 Pfam Cellulase (glycosyl hydrolase family 5) 67 352 IPR001547 GO:0004553|GO:0071704
Cca01g02222 538 Gene3D Glycosidases 25 395 - -
Cca01g02222 538 SUPERFAMILY Ricin B-like lectins 408 513 IPR035992 -
Cca01g02222 538 PANTHER CELLULASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_5G14560) 5 538 - -
Cca01g02222 538 SUPERFAMILY (Trans)glycosidases 26 380 IPR017853 -
Cca01g02222 538 PANTHER HYDROLYZING O-GLYCOSYL COMPOUNDS HYDROLASE 5 538 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02222 Cca-Chr1 50388882 50391732 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02222 25 536 Glycoside Hydrolase AT1G13130 38.417 2.37e-135 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02222 K01179 - egr:104441706 562.377