Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02219 ATGGGAGAAGCTACAGAAAGGTATGCAGTTGTGACAGGTGCAAATAAAGGAATTGGATTGGAGATAGTTAGGCAATTAGCTTCAGCTGGAATCAAGGTGGTTCTGACAGCAAGAAATGAGGAAAGGGGTCTCCAAGCACTGCAGACACTCCAAGCCTCTGGTCTTTCTCACCTTGTTCTCTTTCATCAACTGGATGTGGCTGATGCTACAAGTGCAGCTTCTCTTGCTCATTTCATCAAATCTAAATTTGGAAAACTTGATATTCTGATTAATAATGCAGGGATCGGTGGAATGGTAACTGAAGATGCTGATTTAATCAAAGCAATTATCATGAATCGTGGGGCAATATCAGAAGATGATGGGAGAAAGGGAATTACTCAAACATATGAGTTAGCTAAAGAATGCTTGCAAATAAATTATTATGGAGCCAAAATTACTATAGAATCCCTTATGCCCCTCCTCCAGTTATCTGATTCACCAAGAATTGTGAATGTATCATCCTTCATGGGGCAGTTAGAGAGTTTCACAAAAGGATCATGGGCTAGAGGAGTCTTCAGTGATGTTGATAATCTTAGTGAAGAGAAAGTGGATGAAATATTGAAGGAGTTTCTTAGAGATTTCCAAGAAGGTTCATTTGAAAGTAAAGGTTGGCCTAGGTACCCGAGTGCCTACATTGTCTCTAAAGCTGCTATGAATGCCTATACTAGAATCCTTGCTAAGAAATATCCCTCATTTTGCATCAATAGCGTTTGCCCTGGTTATGTCAAGACACAATTAACTGCTAATACTGGCTTCTTAACGGCTGAAGAAGGTGCAGCTAGTCCTGTGAGGCTAGCATTGCTTCCCAATGGTAGTCCATCTGGCCTTTTCTACAGCCAGAGTGATGTCGCTTCCTTTTGA 900 0.41 MGEATERYAVVTGANKGIGLEIVRQLASAGIKVVLTARNEERGLQALQTLQASGLSHLVLFHQLDVADATSAASLAHFIKSKFGKLDILINNAGIGGMVTEDADLIKAIIMNRGAISEDDGRKGITQTYELAKECLQINYYGAKITIESLMPLLQLSDSPRIVNVSSFMGQLESFTKGSWARGVFSDVDNLSEEKVDEILKEFLRDFQEGSFESKGWPRYPSAYIVSKAAMNAYTRILAKKYPSFCINSVCPGYVKTQLTANTGFLTAEEGAASPVRLALLPNGSPSGLFYSQSDVASF 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02219 299 Pfam Enoyl-(Acyl carrier protein) reductase 214 264 - -
Cca01g02219 299 Pfam short chain dehydrogenase 8 174 IPR002347 -
Cca01g02219 299 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 IPR002347 -
Cca01g02219 299 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 160 168 IPR002347 -
Cca01g02219 299 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 224 243 IPR002347 -
Cca01g02219 299 Gene3D - 3 299 - -
Cca01g02219 299 PRINTS Glucose/ribitol dehydrogenase family signature 8 25 IPR002347 -
Cca01g02219 299 PRINTS Glucose/ribitol dehydrogenase family signature 84 95 IPR002347 -
Cca01g02219 299 PRINTS Glucose/ribitol dehydrogenase family signature 224 243 IPR002347 -
Cca01g02219 299 PRINTS Glucose/ribitol dehydrogenase family signature 243 260 IPR002347 -
Cca01g02219 299 PRINTS Glucose/ribitol dehydrogenase family signature 286 299 IPR002347 -
Cca01g02219 299 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 7 299 - -
Cca01g02219 299 CDD carb_red_PTCR-like_SDR_c 7 296 IPR045313 GO:0016616
Cca01g02219 299 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 285 IPR036291 -
Cca01g02219 299 PANTHER SHORT-CHAIN DEHYDROGENASE/REDUCTASE 7 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02219 Cca-Chr1 50330305 50338293 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02219 9 261 Miscellaneous Gene Families AT2G29150 27.734 2.94e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02219 K15095 - gmx:100801677 495.738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g02219 01 50330305 50338293 Cca01g02219 01 50330305 50338293 ECH