Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02207 ATGGCTACCACTTCTGCTTCGTTCGCTCGCTTCTCCGTCATCTCCAAACTTTCCTCCCATCCACAATTCATCCTCTTCAACATCGCTACTCCAACCGGAAACCCTCATTCACGAACCGGCGCGGCCCGCTTCAGGTGCTCGGCCGGTCAGACCGGGTTCTTCACGAAACTGGGGCGGTTGTTAAAGGAGAAGGCGAAGAGCGACGTGGAGAAGGTGTTCTCGGGTTTCTCCAAGACCCGCAACAACCTCGCCGTCATCGACGAGCTTCTCCTCTATTGGAACCTCGCCGACACCGACCGAGTACTCGATGAACTCGAAGAGGCTCTTTTAGTGTCTGATTTTGGGCCGAAAATCACTATTAAGATAGTGGAGAATTTGCGCGAGGACATACTTTCAGGGAAGCTTAAATCAGGGAATGAGATAAAGGAAGCACTGAAGAGGAATGTTTTGGAATTGCTAACCTCCAAGGGCAGTAAAACTGAACTTCAACTTGGATTCAGGAAGCCATCTGTAATAATGATAGTTGGTGTTAATGGTGGAGGGAAAACAACATCTTTGGGAAAGCTGGCTTATAGATTGAAGAATGAAGGGGCTAAGATATTGATGGCAGCTGGTGATACATTTAGAGCAGCTGCCAGTGACCAGTTAGAAATATGGGCTGAAAGGACTGGGTGTGAGATTGTTGTGGCTGAATCAGAGAAAGCAAAAGCATCATCAGTGCTTTCACAGGCTGTAAAAAAGGGAAAAGAGCTGGGTTTTGATATTGTATTATGTGATACATCTGGGCGTTTACACACTAATTACAGCCTAATGGAAGAGTTGATTTCTTGTAAAAAGTCTGTTGCCAAAGTCATTCCTGGTGCACCTAACGAGATCCTACTTGTTCTGGACGGGACTACTGGTTTGAATATGTTGCCACAAGCGAGAGAATTCAATGAtGTCGTGGGTGTTACTGGTTTAATTTTGACCAAACTGGATGGTTCTGCTAGAGGTGGCTGTGTGGTATTCTCTTCATTTTTTTTAATGAATATTTAA 1035 0.4551 MATTSASFARFSVISKLSSHPQFILFNIATPTGNPHSRTGAARFRCSAGQTGFFTKLGRLLKEKAKSDVEKVFSGFSKTRNNLAVIDELLLYWNLADTDRVLDELEEALLVSDFGPKITIKIVENLREDILSGKLKSGNEIKEALKRNVLELLTSKGSKTELQLGFRKPSVIMIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAESEKAKASSVLSQAVKKGKELGFDIVLCDTSGRLHTNYSLMEELISCKKSVAKVIPGAPNEILLVLDGTTGLNMLPQAREFNDVVGVTGLILTKLDGSARGGCVVFSSFFLMNI 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02207 344 Gene3D - 59 160 IPR042101 -
Cca01g02207 344 Gene3D - 161 338 IPR027417 -
Cca01g02207 344 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 166 334 IPR027417 -
Cca01g02207 344 PANTHER BNAA04G26420D PROTEIN 21 335 - -
Cca01g02207 344 SUPERFAMILY Domain of the SRP/SRP receptor G-proteins 69 146 IPR036225 -
Cca01g02207 344 SMART AAA_5 168 322 IPR003593 -
Cca01g02207 344 SMART SRP54_3 169 343 IPR000897 GO:0005525|GO:0006614
Cca01g02207 344 Pfam SRP54-type protein, helical bundle domain 98 147 IPR013822 GO:0005525|GO:0006614
Cca01g02207 344 PANTHER SIGNAL RECOGNITION PARTICLE RECEPTOR SUBUNIT ALPHA 21 335 - -
Cca01g02207 344 SMART SRP54_N_2 72 153 IPR013822 GO:0005525|GO:0006614
Cca01g02207 344 Pfam SRP54-type protein, GTPase domain 169 335 IPR000897 GO:0005525|GO:0006614
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02207 Cca-Chr1 50227165 50235035 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02207 K03110 - gmx:100791073 613.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g02207 01 50227165 50235035 Cca01g02207 01 50227165 50235035 ECH