Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02205 ATGCCGCCATCCAAATCCAAAACTCTCGAGCTCACACTTTTATCCGTGGAGGGTCTCCGCGTCAGGGGGAAGCCGTCCGACAAGAGCGCCTTCGCGGTGGTTCACGCCGAGTCTCTCACCCACCACACGACGGCCACGGCCAAGGGCAACAACGGCTTCCACGAGTGGAACCAGAAGTTCATGGTGGAGATAGGGGCCTACGCCAGGTCCCTCACGTTCCAAGTTAAGAGCAAGACGGGAATGGGAGCAATGAGAGACGTTGGCGTTGCCAGAATCGCGCTTTCGGATTTCTTGGGAGGCTTGGTGCCCGATCACTGTTTGCAGTTTTTGTCTTACAGGTTGAGGGATTGGGATGGAAGGGAATGCGGGATCGTTAATTTCTCCGTCAGGGCGGTGCcgtcttcgtcttcgtcttcgtcttcgtTGTCAAGTGGAGTCGTACATTCCTGTTGGGATGGCTACTACTACCACCAGACATgtgatcatcagcgtgaggctgaagatgttggtgatgaagcttag 522 0.4828 MPPSKSKTLELTLLSVEGLRVRGKPSDKSAFAVVHAESLTHHTTATAKGNNGFHEWNQKFMVEIGAYARSLTFQVKSKTGMGAMRDVGVARIALSDFLGGLVPDHCLQFLSYRLRDWDGRECGIVNFSVRAVPSSSSSSSSLSSGVVHSCWDGYYYHQTCDHQREAEDVGDEA 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02205 173 Pfam C2 domain 8 100 IPR000008 -
Cca01g02205 173 CDD C2_SRC2_like 8 127 IPR044750 GO:0006952
Cca01g02205 173 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 5 134 IPR035892 -
Cca01g02205 173 Gene3D C2 domain 6 133 IPR035892 -
Cca01g02205 173 SMART C2_3c 8 106 IPR000008 -
Cca01g02205 173 ProSiteProfiles C2 domain profile. 1 107 IPR000008 -
Cca01g02205 173 PANTHER INGRESSION PROTEIN FIC1 6 141 - -
Cca01g02205 173 PANTHER BON1-ASSOCIATED-LIKE PROTEIN 6 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02205 Cca-Chr1 50189743 50192927 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02205 - - gmx:102665635 181.415