Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02198 ATGGTGGTAAGCTCACGTACGCTAGAAATCACGGTGATATCGGGTGAAAACGTTCGCGTAACGGAGGACGCATACGTTGTTGTTCGGGCCGAATCCTTAAACTGTTGCACAACCAGAACGGTCAAAGACCGTGGTACCAATTTGCTTTCGTGGAACGACAAGTTCCTATTGCACGTGCCTGTGCATGCAAGGTCCATCACCTTCGAGGTTCAAAGCAACAAATTCAACGCTTCTCGACCACTTGGGGTCGCAAGAATCGCTCTTTCCGATTTTCTAGGTGGCGACATGTCGGAAAATCAGTTACGAACCTTTAGTTACGGTCTCAGGAACTGGGAAGGGAAGAGAAACGGCGTCATTCATTTCTCCGTCAGGATTGCGCCTCCGCCGGAGAAATGTTCGCCGGCGGCGAGAAGGGGTTGCGGTGACCGGTTCGTCGGAATCAATGTCGGTGACAACAGCTCTAACCAAGTTGTTCTTGGAGTCCCCGTTTTGGTGGAACTACCCCAACACTGa 513 0.5127 MVVSSRTLEITVISGENVRVTEDAYVVVRAESLNCCTTRTVKDRGTNLLSWNDKFLLHVPVHARSITFEVQSNKFNASRPLGVARIALSDFLGGDMSENQLRTFSYGLRNWEGKRNGVIHFSVRIAPPPEKCSPAARRGCGDRFVGINVGDNSSNQVVLGVPVLVELPQH 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02198 170 SMART C2_3c 7 100 IPR000008 -
Cca01g02198 170 Pfam C2 domain 7 98 IPR000008 -
Cca01g02198 170 ProSiteProfiles C2 domain profile. 1 101 IPR000008 -
Cca01g02198 170 PANTHER BON1-ASSOCIATED-LIKE PROTEIN 5 168 - -
Cca01g02198 170 PANTHER INGRESSION PROTEIN FIC1 5 168 - -
Cca01g02198 170 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 4 129 IPR035892 -
Cca01g02198 170 Gene3D C2 domain 3 139 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02198 Cca-Chr1 50136490 50137449 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02198 - - gmx:100810797 223.402