Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02197 ATGGGGATAAGCTTAAGGTCACGTACGCTAGAAATCAGAGTGATATCGGGTGAAAACATTAGCGTAACGGAGGCCGCATACGTCGTCGTTCGGGCCGAGTCCTTAAACAGCTGCACAACCACAACAGCCAAATACGATGGAACCAATTTGCTTGCGTGGAACCACAAGCTCTTGCTGCACGTGCCCGCGCATGCAACCTCCATCACCTTCGAAGTTCAGTGCAACAAATTCAAAGCTTCGAGACCACTTGGGGTCGCCAGAATCGCGCTTTCGGATTTCCTCTCTGACAACGTCTCGGAAAATCAGTTGCAAATGTTGAGTTACGGGCTGAGGAACTGGGAGGGGAAGCAAAACGGCGTCATCCATTTCGCCGTGAGAGTGGCTCCCCCGCCGGAGGAATGTCCAAACTCCGCCGTGGAACCGGTGAAGGGAACGGTGGCCAGAAGGGGTTGCGGTGACCGCTTCGTACGAATCATCAATGTCGGTGATAACGTTGTTGTTGGTGTCCCGTATTCGAGGAACTACCCCAACATTATTTAA 540 0.5241 MGISLRSRTLEIRVISGENISVTEAAYVVVRAESLNSCTTTTAKYDGTNLLAWNHKLLLHVPAHATSITFEVQCNKFKASRPLGVARIALSDFLSDNVSENQLQMLSYGLRNWEGKQNGVIHFAVRVAPPPEECPNSAVEPVKGTVARRGCGDRFVRIINVGDNVVVGVPYSRNYPNII 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02197 179 Gene3D C2 domain 5 145 IPR035892 -
Cca01g02197 179 SMART C2_3c 9 102 IPR000008 -
Cca01g02197 179 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 6 132 IPR035892 -
Cca01g02197 179 Pfam C2 domain 9 103 IPR000008 -
Cca01g02197 179 PANTHER BON1-ASSOCIATED-LIKE PROTEIN 7 176 - -
Cca01g02197 179 PANTHER INGRESSION PROTEIN FIC1 7 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02197 Cca-Chr1 50129193 50130437 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02197 - - gmx:100810797 225.328