Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02167 ATGGCTTCAACCCAAAGAAAGGGACTAGTCCTAAGTTCAAAGGCCATAGCTGATGCAGCTTCATGGTACTGTGCCTTTGTCCTTGTGGCACTCGTGCTCCTAAGCATCTCCAGAGACAGCTCCATGCATCACTTCGTAGACAGCCAACAACTCTTGTCTCGACCGTGCGATGAGATCTATGTTGTTGGAGAAGGTGAGACACTTCACACAATTAGTGACAAGTGTGGTGACCCTTTTATTGTTGACAACAACCCTCATATCCATGACCCTGATGATGTCTTCCCTGGCCTCGTTATCAAGATCATTACACCCTCACATCATACCTAG 327 0.4709 MASTQRKGLVLSSKAIADAASWYCAFVLVALVLLSISRDSSMHHFVDSQQLLSRPCDEIYVVGEGETLHTISDKCGDPFIVDNNPHIHDPDDVFPGLVIKIITPSHHT 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02167 108 PANTHER PEPTIDOGLYCAN-BINDING LYSM DOMAIN PROTEIN 4 106 - -
Cca01g02167 108 Gene3D LysM domain 49 108 IPR036779 -
Cca01g02167 108 CDD LysM 59 101 IPR018392 -
Cca01g02167 108 PANTHER EMBRYO SAC 1 4 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02167 Cca-Chr1 49600364 49601088 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02167 - - gmx:100815990 161.384