Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02159 ATGAGTTTAACATTATGGCTTTTCTTGCTACCCTTCTGCCTCATAAACTTCGGCATCAAAACCATTTTGGTGACTGGTCATTGTCTTGGTCATCAACAATCTTTGTTGCTCCAGTTGAGGAACAACCTCGTATTTAATCCTACCAAGTCCAAAAAATTGATTCACTGGAACCAAAGTGATGATTGTTGTGAATGGAATGGAGTGGCATGCAACAAAGGCCATGTTATAGCCCTAGACTTGAGCCAAGAATCCATCTATGGAGGTATTGAAAATTTAAGCATTCTCTTCGAGTTACAATATTTGAAAAGTGTGAATTTGGCCTATAATGAATTCCATTCTGGAATTCCTCCGGAGTTTCGAAAGTTAAAGAATTTGAGGCATTTGAATTTGTCAAATGCTGGCTTTGAGGGGCAAATTCCAATTGAGATCTCTTACCTAACAAAGATAGTAACTCTTGATTTGTCTAGCACAATTACTTCACAACATGGTTTAAAGCTTCAGAAGCCAAATATTGCTATGCTTTTGCAGAACTTCACAGAAATCAAAGAGCTACACTTGAATGGCATAGCAATATCAACCAAAGGAAAGGTGTGGAGCCATGCTTTATCTTCACTTACAAACTTGCAAGTTTTGAGTATGTCATTTTGTAATCTCTCTGGTCCTTTGGATTCATCATTAGCAAAACTACAGTCTCTCTCAATACTTAAATTGGACCATAACAATTTGGCAAGTCCAGTGCCAAGGTCTTTGGGGAGGTTGTTTAATCTGACCACCTTACAACTCAATGGCTGTAATTTGAGTGGAGTATTTTCAAAAAATCTCTTCCAAATATCATCATTGCAGGTGCTTGATGTGTCTGATAATCCAGGTCTTCATGGTTCTCTACCAAACTTTCCAAGTCAAGGCTCTCTATATAACCTCAATCTTAGCCACACAAATTTTTATGGACCTCTGTCAGATTCTATTCACAATTTGAAGCAATTGTCTAAATTAGATCTATCAAATTGCCAGTTCAAAGGGACACTTCCATCTTCTATGTCAAATCTTACCCAACTTGTTCATCTAGACTTGTCATTCAATACCTTCACTGGTTCTATTCCATCTTTTAATAGGTCTAAGGCCCTCACAGTCTTATCCCTTAATCATAACAAGTTTATGGGTAAAGTTCCATCTACCCATTTTGAGGGCCTTATAAATCTCATGAGCATTGATTTAGGAGATAACTCCTTTGACGGAATAGTCCCCTCATCGTTATTTAGACTACAATCTCTTCAACATCTCTTGCTTTATTACAACAAATTTGATGGTTTATTGGACGAATTTCCAAATGCTTCTTTGTCATCATTAGAGATGCTTGATTTGAGTGGCAACAATTTGCAAGGGCCTATTCCTACATCTATCTTCCAACTCAAAAGACTTCGTTTGCTTCAACTTACCAAAAACAAGTTCAATGGCACCATACAACTTGGTATGTTTGGGAGGATGCAAAATTTATTTACACTAGATCTTGCACACAATAACTTGTTAGTTGATGCAAATATCAGGGATGATCATGATGCACCATCCTTTCCTAATTTGAAAACTCTTTGGTTGGCTTCATGCAATTTGAGAACATTCCCTGACTTGAGAAATAAATCTTCACTACTTTACTTAGACTTATCAAGCAATCAAATTGAAGGAAAAATACCCAAATGGATTTGGAAATTTAATTACATGATCGTTTTGAATCTTTCTCACAACATTTTGGCAGGTTTCGAAGGGCCTTTCCAGAAACTTAGTTCAAATTTGTTGAAACTTGACCTACACGCAAATCAGCTCCAAGGGCCTGCTCCTACTTTTTTGAAAAATGCCATTTACTTGGACTTCTCAAGCAATAGATTCAACTCTATTAACTTGGTAGACATTGGTAGCCACACTCCTTTCTTATATTATCTCTCTCTTTCAAACAACAATTTTCATGGAAGAATCCATGAATCCTTTTGTAACATTTCCGATCTTCGAGCACTTGATCTTTCCCATAACAAATTCAATGGTCAGATTCCTTTGTGTTTGACAAGAAAAAGTAGCACTCTCAGGCTACTAAATCTTGGTGCAAATGAGCTCAATGACTATATTTCAGATACTTTTTCAACCTCATGTTCTCTAAGATTTTTAGATATCAGTGGAAATCTTTTGAAAGGAACCATCCCCAAATCTTTGGCTAATTGCCAAAAACTACAAGTTCTAAACCTTGGAAACAATCAACTAATTGACAAATTCCCTTGCTTCTTGAAAAACATCTCCTCCCTTAGAGTCATGATATTAAGGTCAAACAAATTGCATGGGTGCATTGGATGTTTTAATAACATAGGAAATTGGGAATCACTTCAAATTGTTGATTTAGCCTGTAACAAGTTCAGTGGTACATTACCAGCATCACTCTTACTGAGTTGGAAAACATTGATGCTTGATGAAGATAAGGGTGGACAATTTGGTCATCTGTTTTTTAATCTCTATGATGACTTTAATCCTCTGAACTTTAAAACTGCAATTGTAGATCTCAACAATGAACTTCAAATGAAATTAGCTAAAATTATTGCATCAGAGCCACCCTATATAATAGACCACATAATCACTCATATATTTGAAGAAGGTGTTGGTGTTCGAAGTTACGAGGATTCAGTTACAATTGTCAACAAAGGTACACAATTAAACTTGGTTAAAATCCTCATTGCCTTCACTTCCTTGGATTTCTCAAGCAACCAATTTGAAGGGCCAATACCAAAAGAGCTTATGAATCTCACAGCATTGCATGCTCTTAACTTGTCACAAAATGTTTTCTCGGGCAACATCCCCTTTTCCTTCGGCAACCTAAAGCAACTTGAGTCCTTAGACTTGTCAAATAATTCTTTAAGTGGAGATATTCCCGTAGAACTTGCAAGGTTATCATTTCTTTCGGTGATGAATCTCTCTTATAATCATTTGGTGGGAAAGATTCCCACGGGTACACAAATTCAAACATTTGAGGCTGATTCATTTATAGGCAATGAAGGGTTATATGGACCACCATTGACCCAAAATTGGGGTGGTGAAGGAAGGCAAAAGTTGTCACCACCAGTATATGAAACATTTGATTCTCATGCATGGAGTTCAATTGAATGGAATTTCTTATCTTTAGAATTAGGGTTTACTTTTGGCTTTGGAATTTTCATCTTTCTCCTTATTTTTTTGAAGAGATGGAGGATATGGTATTCCAAGCATGTGGATGACATCCTTTACAAGATCATACCTCAACTTGATTTTGTTTATGTGAATCGAAAAGAGGAATTTCTAAGTTTCACCGCTCAAGCCTTGAGCCACTGCCATAGCTGTGAAATTATGAAGCTTCAACAGATTTCTAGCGTCATGGCCCTAAACCAACGTTACAATGGTGAAGCAACAGAGATGCCACAGATTCTTGGCACCATGGTGCCCAACCAACACTTGAGTTGTGGAAGGCTGAAGTTGATTCAAAAATAG 3498 0.3691 MSLTLWLFLLPFCLINFGIKTILVTGHCLGHQQSLLLQLRNNLVFNPTKSKKLIHWNQSDDCCEWNGVACNKGHVIALDLSQESIYGGIENLSILFELQYLKSVNLAYNEFHSGIPPEFRKLKNLRHLNLSNAGFEGQIPIEISYLTKIVTLDLSSTITSQHGLKLQKPNIAMLLQNFTEIKELHLNGIAISTKGKVWSHALSSLTNLQVLSMSFCNLSGPLDSSLAKLQSLSILKLDHNNLASPVPRSLGRLFNLTTLQLNGCNLSGVFSKNLFQISSLQVLDVSDNPGLHGSLPNFPSQGSLYNLNLSHTNFYGPLSDSIHNLKQLSKLDLSNCQFKGTLPSSMSNLTQLVHLDLSFNTFTGSIPSFNRSKALTVLSLNHNKFMGKVPSTHFEGLINLMSIDLGDNSFDGIVPSSLFRLQSLQHLLLYYNKFDGLLDEFPNASLSSLEMLDLSGNNLQGPIPTSIFQLKRLRLLQLTKNKFNGTIQLGMFGRMQNLFTLDLAHNNLLVDANIRDDHDAPSFPNLKTLWLASCNLRTFPDLRNKSSLLYLDLSSNQIEGKIPKWIWKFNYMIVLNLSHNILAGFEGPFQKLSSNLLKLDLHANQLQGPAPTFLKNAIYLDFSSNRFNSINLVDIGSHTPFLYYLSLSNNNFHGRIHESFCNISDLRALDLSHNKFNGQIPLCLTRKSSTLRLLNLGANELNDYISDTFSTSCSLRFLDISGNLLKGTIPKSLANCQKLQVLNLGNNQLIDKFPCFLKNISSLRVMILRSNKLHGCIGCFNNIGNWESLQIVDLACNKFSGTLPASLLLSWKTLMLDEDKGGQFGHLFFNLYDDFNPLNFKTAIVDLNNELQMKLAKIIASEPPYIIDHIITHIFEEGVGVRSYEDSVTIVNKGTQLNLVKILIAFTSLDFSSNQFEGPIPKELMNLTALHALNLSQNVFSGNIPFSFGNLKQLESLDLSNNSLSGDIPVELARLSFLSVMNLSYNHLVGKIPTGTQIQTFEADSFIGNEGLYGPPLTQNWGGEGRQKLSPPVYETFDSHAWSSIEWNFLSLELGFTFGFGIFIFLLIFLKRWRIWYSKHVDDILYKIIPQLDFVYVNRKEEFLSFTAQALSHCHSCEIMKLQQISSVMALNQRYNGEATEMPQILGTMVPNQHLSCGRLKLIQK 1165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02159 1165 SUPERFAMILY RNI-like 259 622 - -
Cca01g02159 1165 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1-LIKE-RELATED 1 1096 - -
Cca01g02159 1165 PRINTS Leucine-rich repeat signature 951 964 - -
Cca01g02159 1165 PRINTS Leucine-rich repeat signature 449 462 - -
Cca01g02159 1165 SUPERFAMILY L domain-like 55 296 - -
Cca01g02159 1165 SMART LRR_typ_2 325 349 IPR003591 -
Cca01g02159 1165 SMART LRR_typ_2 446 470 IPR003591 -
Cca01g02159 1165 SMART LRR_typ_2 421 443 IPR003591 -
Cca01g02159 1165 SMART LRR_typ_2 229 253 IPR003591 -
Cca01g02159 1165 SMART LRR_typ_2 951 975 IPR003591 -
Cca01g02159 1165 SMART LRR_typ_2 397 420 IPR003591 -
Cca01g02159 1165 SMART LRR_typ_2 205 228 IPR003591 -
Cca01g02159 1165 SMART LRR_typ_2 122 146 IPR003591 -
Cca01g02159 1165 SMART LRR_typ_2 523 545 IPR003591 -
Cca01g02159 1165 Gene3D Ribonuclease Inhibitor 415 511 IPR032675 -
Cca01g02159 1165 Pfam Leucine Rich Repeat 953 969 IPR001611 GO:0005515
Cca01g02159 1165 Gene3D Ribonuclease Inhibitor 194 299 IPR032675 -
Cca01g02159 1165 Gene3D Ribonuclease Inhibitor 512 849 IPR032675 -
Cca01g02159 1165 Gene3D Ribonuclease Inhibitor 886 1022 IPR032675 -
Cca01g02159 1165 ProSiteProfiles Leucine-rich repeat profile. 953 976 IPR001611 GO:0005515
Cca01g02159 1165 PANTHER LEUCINE-RICH REPEAT-CONTAINING, PLANT-TYPE, LEUCINE-RICH REPEAT DOMAIN, L-RELATED 1 1096 - -
Cca01g02159 1165 Gene3D Ribonuclease Inhibitor 300 414 IPR032675 -
Cca01g02159 1165 Gene3D Ribonuclease Inhibitor 27 193 IPR032675 -
Cca01g02159 1165 SUPERFAMILY L domain-like 615 1006 - -
Cca01g02159 1165 Pfam Leucine rich repeat N-terminal domain 32 71 IPR013210 -
Cca01g02159 1165 Pfam Leucine rich repeat 374 433 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02159 Cca-Chr1 49505128 49509556 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02159 6 1073 Receptor kinase-like Gene Family AT1G47890 33.394 3.25e-137 441
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02159 - - gmx:100805833 1790.01