Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02156 ATGGCGGACGCCGACCTCACCTCGCCGCTCCTCTCCTCCGACCACATCGTCGTCACCGTCCACTCCTCCGCCTCCGCCGCGCCCTCCGCCAATCCATTCCGCGCGCTCGGCTGCGACGACGAGTTGTCCGTGCCGCCGCCCGTGACCGTGGACCCCTTCCGCAACGACACGGCGGCGATAGAGGGAATCTACGAGTACGTGAAGACGGTGGTGTGTCTGCCGTTGGCGGTGCTGCGGCTGGTGCTGTTCGGGCTGTGTCTGGCGGTGGGGTACGTGGCGACGAAGGTGGCGCTGGAAGGCTGGAAGGACAAGGAGAATCCGATGCCGAAGTGGAGGTGTAGGGTTATGTGGATCACGCGCTTGTGCGCAAGATGCATTCTCTTCTCCTTTGGCTATCAGTGGATAAAACGGAAAGGAAGACCTGCACCAAGGGAAGTTGCTCCAATAATTGTATCCAATCATGTATCTTATATTGAACCTATCTTCTATTTCTATGAATTATTTGCCACCATTGTGGCATCTGAGTCTCATGACTCCATACCTTATGTTGGCACCATTATTAGAGCGATGCAGGTCATATATGTTAACAGGTTCGTACAATCATCAAGGAGGCAGGCCATCAGAGAAATAAAGAGAAGGGCCTCTTGTGATAGATTTCCTCGAGTACTATTATTTCCCGAGGGAACCACAACTAATGGCAGGAACCTTATCTCCTTCCAACTTGGTGCATTTATCCCTGGATACCCAATCCAGCCTGTAATAGTACGCTATCCACATGTGCACTTTGACCAATCCTGGGGTAATGTTTCTTTGGGAAAGCTTATGTTCAGGATGTTTACTCAATTTCATAACTTTTTTGAGGTAGAATATCTTCCAGTCATTTCACCCCTGGATGATAAGGAAACTGCTGTACATTTTCGGGAAAGGACTAGTCGTGCTATTGCAACTGCAATGAATGCTGTGCAGACAGGACATTCTTATGGGGACATAATGCTTCATATGAAAGCACAAGAGGCAAAACAGGAGAACCCCTCAAGTTTTATGGTTGAAATGACCAAGGTGGAATCATTATTTCATATCAGCAGCACGGAAGCTGTGGACTTTTTGGCTAAATTCTTGGCCATGCATCCTGATCCAAGTGGTCGTGTTCAATATCATGACTTCTTGAGGGTTTTAAGACTTAAGGCTTGCCCGCAATCTGCAAAGATATTTGCGTTCATTGATGTGGAGAAAAGTGGGACAATTACATTCAGACAGTTCTTGTATGGATCTGCCCATGTCATGACTCAACCAGGGTTCCATCAAGCCTGTGAAGAAGCCTTTGCTGGGTGTGGTGGTGCAGTAAAGGCCTTTATTGTTGAACAAGAGTTTCGAGATTTCATTCAACCTTCTAGCCCCAGCTGGAATGAGGATGAGGCCCATAATCTTTTCATGTTGTTTGATGACAATAACGATGGAAGAATTGACAAGGATGACTTTCTTTCATGCCTTAGAAGAAATCCTCTTCTCATAGCATTTTTTATACCCCAACCACAGCAAAAGGGATTGGATGTTAATGAAGTGATAGAGATAGTATGA 1578 0.4721 MADADLTSPLLSSDHIVVTVHSSASAAPSANPFRALGCDDELSVPPPVTVDPFRNDTAAIEGIYEYVKTVVCLPLAVLRLVLFGLCLAVGYVATKVALEGWKDKENPMPKWRCRVMWITRLCARCILFSFGYQWIKRKGRPAPREVAPIIVSNHVSYIEPIFYFYELFATIVASESHDSIPYVGTIIRAMQVIYVNRFVQSSRRQAIREIKRRASCDRFPRVLLFPEGTTTNGRNLISFQLGAFIPGYPIQPVIVRYPHVHFDQSWGNVSLGKLMFRMFTQFHNFFEVEYLPVISPLDDKETAVHFRERTSRAIATAMNAVQTGHSYGDIMLHMKAQEAKQENPSSFMVEMTKVESLFHISSTEAVDFLAKFLAMHPDPSGRVQYHDFLRVLRLKACPQSAKIFAFIDVEKSGTITFRQFLYGSAHVMTQPGFHQACEEAFAGCGGAVKAFIVEQEFRDFIQPSSPSWNEDEAHNLFMLFDDNNDGRIDKDDFLSCLRRNPLLIAFFIPQPQQKGLDVNEVIEIV 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02156 525 Pfam EF-hand domain pair 469 499 IPR002048 GO:0005509
Cca01g02156 525 PANTHER BNAA03G56890D PROTEIN 30 511 - -
Cca01g02156 525 PANTHER PHOSPHOLIPID ACYLTRANSFERASE 30 511 - -
Cca01g02156 525 Gene3D - 342 521 - -
Cca01g02156 525 ProSiteProfiles EF-hand calcium-binding domain profile. 468 503 IPR002048 GO:0005509
Cca01g02156 525 CDD LPLAT_LPCAT1-like 123 331 IPR045252 GO:0008374
Cca01g02156 525 SUPERFAMILY EF-hand 358 507 IPR011992 -
Cca01g02156 525 SUPERFAMILY Glycerol-3-phosphate (1)-acyltransferase 121 325 - -
Cca01g02156 525 SMART plsc_2 148 258 IPR002123 GO:0016746
Cca01g02156 525 ProSitePatterns EF-hand calcium-binding domain. 481 493 IPR018247 -
Cca01g02156 525 SMART efh_1 367 395 IPR002048 GO:0005509
Cca01g02156 525 SMART efh_1 399 427 IPR002048 GO:0005509
Cca01g02156 525 SMART efh_1 472 500 IPR002048 GO:0005509
Cca01g02156 525 Pfam Acyltransferase 146 252 IPR002123 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02156 Cca-Chr1 49466289 49473989 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02156 98 329 Acyl Lipid Metabolism Gene Families AT1G80950 29.389 3.22e-30 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02156 K13510 - gmx:100818109 926.006