Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02146 ATGGCAGAAGAAGCGGTTCCAAAAGTGCTTGTTCTGGGTCCCCTAATGTGCTTCGCAACCCTTGAACCACTCTACTCTCACAAGTTTCATTTCCTAAGCCCAAACCCCAACCACTCTCTTCAACACTTCCTGCGTCTCCACCACCCTTCCTCAATCCGCGCCCTTCTCTGCAGCGCCAATTACTCCGTCTCCGCCCAAGTTctccgcctcctcccctcgctccgccttctcctcACCACCAGCGCCGGAACCGAACACATTGACCTCCGCGAGTGTCGCCGCCGGGGAATCCAGGTCGCCGCCGCCGGAGGGATCTTCTCCCAGGATGTGGCCGACGCCGCTGTCGCTCTCCTCCTCGACGTCACCAGGAATATCTCCGCGGCGGATCGATATTTGAGGACGCCGAATCACGCGAATCCGCCATCGGAGGTTTTCACTTTCGCCTCCAAGTTATCAGGTAAGCGAATTGGGATTGTTGGATTGGGAAGCATTGGCATGGAAGTGGCTAAGAGGCTCGAGTCTTTTGGTTGCATTATCTCATACAACTCTAAGCATAAAAAAGCTAATGTTTCGTATCCTTTCTATTCTAGTGTTGTTGATCTTGCAACTACGTGCGATGCTCTTGTGGTTTGTTGTGCATTAAATGAGCAAACAAAGCACATAATTAACAGGGAAGTCATTTCGGCATTAGGAAAAGGAGGGTTTATTGTGAATGTTGGAAGAGGGGGTCTTATTGATGAAAAGGAATTGGTTAAGTGTTTGATGGAAGGGAAAATTGGAGGTGCTGGTTTGGATGTGTTTGAGAATGAACCTCATGTTCCCAAAGAGCTCTTTCAAATGAATAATGTGGTTTTGTCTCCACACTGTGCTGCTTTAACTGACAAATCTAATATGGATATGTGTGAACTTGTGGGAGGGAATTTAGAAGCCTTCTTCTCAAATAGGCCCTTAATTAATCAAGTAATGTTGGACATGGTTGAATAA 984 0.4573 MAEEAVPKVLVLGPLMCFATLEPLYSHKFHFLSPNPNHSLQHFLRLHHPSSIRALLCSANYSVSAQVLRLLPSLRLLLTTSAGTEHIDLRECRRRGIQVAAAGGIFSQDVADAAVALLLDVTRNISAADRYLRTPNHANPPSEVFTFASKLSGKRIGIVGLGSIGMEVAKRLESFGCIISYNSKHKKANVSYPFYSSVVDLATTCDALVVCCALNEQTKHIINREVISALGKGGFIVNVGRGGLIDEKELVKCLMEGKIGGAGLDVFENEPHVPKELFQMNNVVLSPHCAALTDKSNMDMCELVGGNLEAFFSNRPLINQVMLDMVE 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02146 327 SUPERFAMILY Formate/glycerate dehydrogenase catalytic domain-like 7 135 - -
Cca01g02146 327 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 52 321 IPR006139 GO:0016616|GO:0051287
Cca01g02146 327 PANTHER 2-HYDROXYACID DEHYDROGENASE-RELATED 4 321 - -
Cca01g02146 327 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 107 291 IPR036291 -
Cca01g02146 327 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 115 290 IPR006140 GO:0051287
Cca01g02146 327 Gene3D - 107 293 - -
Cca01g02146 327 Gene3D - 28 316 - -
Cca01g02146 327 PANTHER D-ISOMER SPECIFIC 2-HYDROXYACID DEHYDROGENASE FAMILY PROTEIN-RELATED 4 321 - -
Cca01g02146 327 CDD HPPR 7 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02146 Cca-Chr1 49166888 49169829 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02146 K15919 - gmx:100776772 482.641