Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02107 ATGCAAACTTTGGAAAATTTCGGAGACAATATCGAGTTCAATTCTCAAAGTTTGGGAGATGGTGATAGTAATGCACTAATTTTGCCTGCTAAGAGAATGAAGAAAAGGAAAGGGAAGGAACAGGAACATGGAAAACTCCAATCAAATAAGAAACAGAAATTGAGCAAGCCTCAGAAAAGGAAGATGAAGAAGAAGTTAGAGAATGACAAGGAGAAGCAACTTCTGCTGGAAAAAGCCATTAAGACATTGAATGAAAACACACTTCCAGAGTATGCATATCCTCTTTTGCTGTCAACATGCAATATAAATCGGGATGAAACTGCGAAGGAGAAGCGTAGAAGGGCTGTGCATTTATTGAAAGAAGGATTGGAGGTTCCAGATAATGGGCTGTCTAAGAAACCTGAAACGGATGAGATTCATTTAGCCCAAGCTGATGAAGTCAAAGAAATTGACATCATTCAAATTCAACCCATTAGATCAGAAGAAGTCTTAAATACAATTTCCGTTCCTTTGGAGTCCTCTCAAGAACCAGTTCCTGGCAATGATGTTGAAAATTATAAATATGTTTCTGAACCTCTTGCTGACATTTCCATTAAGCAACTGGATGAAATCAGATGCTCTCCCATGTCTTGTTCTAATGATGAAATAAAAAGCACCAAGTCAAAGGATAAGTCAGATGATAACCAAGATTCCAATTTCAAAGAATTCGGCAACCTTCTGGATTATTCTTCAACTAGGCCTCCAAATGTTCCTACTGTTGTGCATGTGCACAGACCAACAGAAGTTGAAGACAAAAGAAAGGATCTGCCTATAGTCATGATGGAGCAAGAGATAATGGAAGCTATAAATGACCGGTCTAGTGTTATCATATGTGGAGAAACTGGGTGTGGTAAAACGACTCAAGTTCCTCAGTTTCTTTATGAAGCTGGCTATGGTTCAAGTAAGGGTGTTATTGGTGTTACTCAACCTCGCCGTGTGGCTGTTCTTGCCACAGCTAAGCGTGTGGCATATGAGCTTGGTTTTCGTCTAGGGAAGGAGGTTGGTTTTCAAGTCAGATATGACAAAAAGATTGGAGAAAGTTGTTCTATCAAGTTTATGACTGATGGAATTTTGCTACGAGAAGTTCAGAATGATATTTTGTTGAGGCGTTATTCTGTCATAGTTCTTGATGAGGCTCATGAGAGGAGCTTGAACACAGACATTCTGATCGGGATGCTCTCACGTGTAATTAAAACTCGCCAAATGATTTATAATGAACAGAAAAAATTGATACTTTCAGGAGAAAGCATAAGTCCTGAAAAAATCATTTTTCCATTAAAACTTGTTCTTATGAGTGCCACCATGCGAGTACAAGACTTCACTTCTGGAAAGTTATTCCATACTCCTCCACCTGTTATAGAAGTTCCTACAAGGCAATTTCCAGTAACAGCATACTTCTCAAAGAAAACAGAGAAAACAGATTACATTGGAGAAGCATATAAGAAGGTCTTGGCAATTCACAAGAGGTTGCCATCTGGGGGCATACTTGTCTTTGTTACTGGGCAAAGGGAAGTAGAGGACTTATGCAGGAAGTTACGTAAAGCATCGAAGGAGTTTATCAAGAAAAGAGTTGAAGAGTCTGTGGAAAGTGATAGCACTGTGGTCCATGAAACAAATTCTATTGAGGGAGTAAATATTAATGAGATCAATGAAGCATTTATGGTCCAAGGAAGTTCATCCTTCCAGCAAACTGATAGATTTAGTGGTTATGATGAAGATGAGGATAATGTAAATTGGAATGAATCTGATTTTTCTTATGACTCAGAAACAGAAAGTGAACTGGAGTTTGATGATGATGATGATCTTGAGCTATCGGAGAACAAGAGTAATATTGTTGATGCCTTAGGACAGGTGGAAAGTCTTGCTTCACTGAAGGCTGCTTTTGAAAAATTGTCTGGGCAAGCCACATTAAGCTCCTCAAATGGAGAGCAGACATTTTCTGCAAATATCGAAGGAAATGTAGAGGAAACAAAAGTTTCCAGGGAGAAAAGAGGTCGAGAAAATTGTAATCTTTCTCCAGGTGCACTCTTTGTTCTACCTCTGTATGCCATGCTTCCTGCAGCAGCTCAACTTCGTGTGTTTGAAGAAGTCAAGGAGGGAGAGAGGCTTGTTGTTGTTGCCACAAATGTTGCTGAAACATCTTTAACAATTCCAGGGATAAAGTATGTGGTTGATACCGGAAGAGAAAAGGTGAAGAATTATGACCCCTCTAATGGCATGGAGACATATGAAGTACAATGGATAAGTAAGGCATCTGCCGCACAGCGTGCAGGCAGATCTGGAAGAACTGGACCTGGACACTGCTATCGTCTCTATTCTTCTGCAGCCTTTAATAATGAATTTCCTGAGCACTCTCCTGCTGAAGTTGAGAAAGTACCTGTTCATGGTGTTGTCCTTCTCTTGAAATCCATGCATATTAAAAAGGTTGCAAACTTCCCATTTCCTACTTCTCTTAAAGCTGCTTCTCTGCTTGAGGCTGAAAATTGCTTGAAAGCTCTTGAAGCACTTGATAGCAACGATGAACTTACACTTTTGGGGAAAGCCATGGCACATTATCCCTTGAGTCCTCGTCATTCTAGAATGCTCCTCACTCTTATTAAAAATACAAGACATGAGCATAAATGTAATCAAAATATGCTTTTGGCATATGCTGTTGCAGCTGCTGCAGCTTTGAGTTTGTCAAATCCTTTTGTAATGCAATATGAAGATGACAGCAGCAGAGATTCAGAGATGTCTGAGAAACCTAGCATGCGAGACAGTGAGAAAGACACTGCTAAAAAAGAAAAATCCAAGAGAAAGAAACTAAAAGAAACAGCTAAAGTTGCACGTGAAAAATTCCGAGTTCTCACTAGTGATGCCTTAACCATAGCTTTTGCTTTGCAGTGTTTTGAACATTCACAAAAATCAGTACAATTCTGCGATGACAATGCATTGCATTTCAAAACCATGGATGAAATGTCCAAACTTCGACAACAGCTACTTAAACTGGTCTTTTATCAGAGTGATAAAGGTGGTTTTGAAAAAGAGTACTCATGGAATCATGGAACATTAGAGGATGTAGAATGTGCTTGGCAGGTTTCTTCTGGAAAATACCCTCTTTCTCTGGTTGAGGAAAGGCTCATCTGTCAAGCAATATGTGCTGGCTGGGCAGATAGGGTTGCTAAACGTGTTACAGCTTCTTCTAGGGCCTCTGATGGAGAGAGAACTTCTCGCATTTTAAGGTACCAATCATGCATGGTTGATGAAAGTGTTTTCCTTCATCGTTGGTCATCAGTTTCCATTGTAGGCCCCGAGTTTTTGGTTTACAATGAACTATTAGAGACCAAAAGACCAGACAAAGAAGGGATAACAAGTGCCAAGAGAGCATATATGCACGGAGTAACTAGTGTAGAGCCAGCTTGGCTCGTTGAGCATGCAAGGTCTTCATGCATCTTATCTCCTCCCCTTCTGGATCCTAGACCTTACTATGATGCTCAGACTGACCAAGTAAAATGTTGGGTAATCCCAACCTTTGGACGTTTCTGTTGGGAGCTTCCAAAATATTCATTGCCCATTAGCAATGATGAACACCGGGTGCAAGTGTTTGCCTATGCATTGCTTGAAGGCCAGGTGTGTCCCTGTTTAAAATCTGTTCGAAAATACATGTCTGCTCCACCTGAAAGTATTATGAAGAGAGAAGCATTTGGTCAAAAAAGGGTGGGAAATCTTTTAGCCAAGTTAAAGAGCAGGCTGATTGATAGTTCTGCTATGTTAAGAATGGTGTGGAAGGAGAATCCAAGGGAATTATTTTCAGAAATTTTGGATTGGTTTCAGAAGAGTTTTCACAGACAATTTGAAGACTTGTGGTTACAAATGCTTCATGAACTGCTTATGGAGACACAAGAACGCCCTCTGCATAAAAGTTCTAAAAAGAAGAAAGGAAAATCTAAAACACTACGATAA 3981 0.3986 MQTLENFGDNIEFNSQSLGDGDSNALILPAKRMKKRKGKEQEHGKLQSNKKQKLSKPQKRKMKKKLENDKEKQLLLEKAIKTLNENTLPEYAYPLLLSTCNINRDETAKEKRRRAVHLLKEGLEVPDNGLSKKPETDEIHLAQADEVKEIDIIQIQPIRSEEVLNTISVPLESSQEPVPGNDVENYKYVSEPLADISIKQLDEIRCSPMSCSNDEIKSTKSKDKSDDNQDSNFKEFGNLLDYSSTRPPNVPTVVHVHRPTEVEDKRKDLPIVMMEQEIMEAINDRSSVIICGETGCGKTTQVPQFLYEAGYGSSKGVIGVTQPRRVAVLATAKRVAYELGFRLGKEVGFQVRYDKKIGESCSIKFMTDGILLREVQNDILLRRYSVIVLDEAHERSLNTDILIGMLSRVIKTRQMIYNEQKKLILSGESISPEKIIFPLKLVLMSATMRVQDFTSGKLFHTPPPVIEVPTRQFPVTAYFSKKTEKTDYIGEAYKKVLAIHKRLPSGGILVFVTGQREVEDLCRKLRKASKEFIKKRVEESVESDSTVVHETNSIEGVNINEINEAFMVQGSSSFQQTDRFSGYDEDEDNVNWNESDFSYDSETESELEFDDDDDLELSENKSNIVDALGQVESLASLKAAFEKLSGQATLSSSNGEQTFSANIEGNVEETKVSREKRGRENCNLSPGALFVLPLYAMLPAAAQLRVFEEVKEGERLVVVATNVAETSLTIPGIKYVVDTGREKVKNYDPSNGMETYEVQWISKASAAQRAGRSGRTGPGHCYRLYSSAAFNNEFPEHSPAEVEKVPVHGVVLLLKSMHIKKVANFPFPTSLKAASLLEAENCLKALEALDSNDELTLLGKAMAHYPLSPRHSRMLLTLIKNTRHEHKCNQNMLLAYAVAAAAALSLSNPFVMQYEDDSSRDSEMSEKPSMRDSEKDTAKKEKSKRKKLKETAKVAREKFRVLTSDALTIAFALQCFEHSQKSVQFCDDNALHFKTMDEMSKLRQQLLKLVFYQSDKGGFEKEYSWNHGTLEDVECAWQVSSGKYPLSLVEERLICQAICAGWADRVAKRVTASSRASDGERTSRILRYQSCMVDESVFLHRWSSVSIVGPEFLVYNELLETKRPDKEGITSAKRAYMHGVTSVEPAWLVEHARSSCILSPPLLDPRPYYDAQTDQVKCWVIPTFGRFCWELPKYSLPISNDEHRVQVFAYALLEGQVCPCLKSVRKYMSAPPESIMKREAFGQKRVGNLLAKLKSRLIDSSAMLRMVWKENPRELFSEILDWFQKSFHRQFEDLWLQMLHELLMETQERPLHKSSKKKKGKSKTLR 1326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02107 1326 MobiDBLite consensus disorder prediction 209 235 - -
Cca01g02107 1326 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 636 818 IPR001650 -
Cca01g02107 1326 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 385 394 IPR002464 -
Cca01g02107 1326 SMART AAA_5 284 441 IPR003593 -
Cca01g02107 1326 MobiDBLite consensus disorder prediction 650 667 - -
Cca01g02107 1326 PANTHER - 21 127 - -
Cca01g02107 1326 PANTHER - 249 1308 - -
Cca01g02107 1326 Pfam Helicase conserved C-terminal domain 688 777 IPR001650 -
Cca01g02107 1326 Gene3D - 828 953 - -
Cca01g02107 1326 MobiDBLite consensus disorder prediction 917 949 - -
Cca01g02107 1326 Pfam Helicase associated domain (HA2) 839 968 IPR007502 GO:0004386
Cca01g02107 1326 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 279 466 IPR014001 -
Cca01g02107 1326 SMART ha2_5 838 970 IPR007502 GO:0004386
Cca01g02107 1326 MobiDBLite consensus disorder prediction 1 22 - -
Cca01g02107 1326 PANTHER ATP-DEPENDENT RNA HELICASE 21 127 - -
Cca01g02107 1326 PANTHER ATP-DEPENDENT RNA HELICASE 249 1308 - -
Cca01g02107 1326 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 1054 1153 IPR011709 -
Cca01g02107 1326 MobiDBLite consensus disorder prediction 577 604 - -
Cca01g02107 1326 CDD DEXHc_DHX37 269 468 - -
Cca01g02107 1326 MobiDBLite consensus disorder prediction 216 231 - -
Cca01g02107 1326 SMART ultradead3 267 478 IPR014001 -
Cca01g02107 1326 Gene3D - 215 471 IPR027417 -
Cca01g02107 1326 MobiDBLite consensus disorder prediction 1 68 - -
Cca01g02107 1326 CDD SF2_C_RHA 679 785 - -
Cca01g02107 1326 Gene3D - 472 557 IPR027417 -
Cca01g02107 1326 Gene3D - 645 798 IPR027417 -
Cca01g02107 1326 Coils Coil 931 958 - -
Cca01g02107 1326 MobiDBLite consensus disorder prediction 587 604 - -
Cca01g02107 1326 Coils Coil 66 86 - -
Cca01g02107 1326 Pfam DEAD/DEAH box helicase 276 452 IPR011545 GO:0003676|GO:0005524
Cca01g02107 1326 MobiDBLite consensus disorder prediction 650 678 - -
Cca01g02107 1326 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 274 881 IPR027417 -
Cca01g02107 1326 SMART helicmild6 672 777 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02107 Cca-Chr1 48480195 48486720 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02107 K14780 - gmx:100788201 2168.66