Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02080 ATGGCTGGGGAAACCGAGAACACCCTCTCTTGTGCTAACTGTAGCAAACCTGCAAATCTTCAGTGTCCGAAATGTATGGAGTTGAAGCTTCCCCGTGAAGGTTCTGCCTTCTGCTCTCAGGAATGTTTCAAGTCTTCATGGAGCTCGCACAAATCAGTGCATCTGAAGGCAAAACTATCCTCACCTGGTGCACAAAATTCAGATTCACTTGGTGAAGGTTGGTTGTATTGTTTGAAGAGAGGGCAGGGTCGAACTCCAAAATTTCCTCACTTTGATTGGACTGGACCACTGCGGCCATATCCTATTTCTAGCCAAAGAATTGTCCCAGATCATGTTGATAAACCTGATTGGGCTGTTGATGGAATTCCCAAAATTGAGCCCTATAGTGCTCTGCAACATACTGTTGAGGTCAAAACTCCAGATCAAATTGAGAGAATGAGGGAAACTTGTCGGATTGCAAGGGAGGTGTTGGATGCAGCTGCTCGGATTATTCAGCCTGGTGTGACAACTGATGAAATTGACCGAGTTGTTCATGAGGCAACTATTGCTGCAGGAGGATATCCATCGCCACTTAATTACCATTTCTTCCCTAAATCTTGCTGCACGTCAGTTAATGAAGTAATCTGCCATGGAATTCCTGATGCAAGGAAGCTTGAGGATGGTGACATTGTAAATGTTGATGTCACTGTATACTATAAAGGTGTTCATGGTGATCTCAATGAAACATACTTTGTGGGAAATGTTGATGAAGAGTCTGGCAAACTAGTAAAATGCACATATGAGTGCCTGGAGAAGGCAATATCCATTGTTAAACCTGGGGTACGATTCCGTGAAATTGGTGAAGTTATTAATCGCCATGCATCAATGTCTGGCTTCTCAGTGGTAAAATCATATTGTGGTCATGGAATTGGTGAGCTCTTCCATTGTGCACCAAACATTCCTCATTATGCAAGAAATAAAGCAGTTGGTGTGATGAAGGCTGGGCAGACCTTTACAATTGAACCAATGATCAACGCAGGTGTCTGGCGTGATCGAATGTGGCCTGATGGATGGACTGCTGTTACAGCAGATGGTAAAAGAAGTGCTCAATTTGAGCACACTCTTTTGGTGACAGAGACTGGTGTTGAAGTTTTAACAGGGCGGTTGCAAACATCACCCAATGTTTTCCCTTGGCTAAATTCATAA 1185 0.4363 MAGETENTLSCANCSKPANLQCPKCMELKLPREGSAFCSQECFKSSWSSHKSVHLKAKLSSPGAQNSDSLGEGWLYCLKRGQGRTPKFPHFDWTGPLRPYPISSQRIVPDHVDKPDWAVDGIPKIEPYSALQHTVEVKTPDQIERMRETCRIAREVLDAAARIIQPGVTTDEIDRVVHEATIAAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDARKLEDGDIVNVDVTVYYKGVHGDLNETYFVGNVDEESGKLVKCTYECLEKAISIVKPGVRFREIGEVINRHASMSGFSVVKSYCGHGIGELFHCAPNIPHYARNKAVGVMKAGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVTETGVEVLTGRLQTSPNVFPWLNS 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02080 394 Gene3D - 2 57 - -
Cca01g02080 394 CDD MetAP1 143 379 IPR002467 GO:0006508|GO:0070006
Cca01g02080 394 ProSitePatterns Methionine aminopeptidase subfamily 1 signature. 298 316 IPR002467 GO:0006508|GO:0070006
Cca01g02080 394 PRINTS Methionine aminopeptidase-1 signature 200 213 IPR001714 -
Cca01g02080 394 PRINTS Methionine aminopeptidase-1 signature 222 238 IPR001714 -
Cca01g02080 394 PRINTS Methionine aminopeptidase-1 signature 292 304 IPR001714 -
Cca01g02080 394 PRINTS Methionine aminopeptidase-1 signature 323 335 IPR001714 -
Cca01g02080 394 PANTHER METHIONINE AMINOPEPTIDASE 1 9 387 - -
Cca01g02080 394 PANTHER METHIONINE AMINOPEPTIDASE 9 387 - -
Cca01g02080 394 Pfam zf-MYND-like zinc finger, mRNA-binding 12 55 IPR031615 -
Cca01g02080 394 Gene3D Creatinase/methionine aminopeptidase superfamily 91 390 IPR036005 -
Cca01g02080 394 SUPERFAMILY HIT/MYND zinc finger-like 9 52 - -
Cca01g02080 394 TIGRFAM met_pdase_I: methionine aminopeptidase, type I 136 380 IPR002467 GO:0006508|GO:0070006
Cca01g02080 394 Hamap Methionine aminopeptidase [map]. 135 381 IPR002467 GO:0006508|GO:0070006
Cca01g02080 394 Pfam Metallopeptidase family M24 144 372 IPR000994 -
Cca01g02080 394 SUPERFAMILY Creatinase/aminopeptidase 89 380 IPR036005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02080 Cca-Chr1 48140195 48147778 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02080 K01265 - gmx:100785022 782.326