Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02048 ATGAAGTTTGGGAAGAGACTGAAGCAACAGATTCAGGAGTCTTTGCCCGAGTGGAGGGACAAGTACTTGTCCTACAAGGAGTTGAAGAAGCTTGTGAGACTCATTTCCGCCGCGACACCAACGTTGGAATATGGCAAGAACGAGGCTGATTTCATGTACTTGTTGAACCATGAAATTGACAAGTTCAATGCCTTCTTCATGGAGCAAGAGGAGGACTTCATCATTCGCCATATGGAAGTGCAACAGAGAATCAAGAGAGTAGTTGATCTATGGGGACCCAATGGTAGTCAACCTTCAGAAGCGGATTATAGGGAGGAGATGGCAAGAATCAGAAAAGATATAGTTGATTTCCATGGTGAAATGGTTCTCCTAGTAAACTACAGCAACATCAATTACATTGGGTTGGCTAAAATTCTGAAGAAATACGACAAGAGAACAAAGAGGCTTCTGCGTTTGCCATTCATTCAGAAAGTGTTGGAGCAGCCCTTTTTCACAACGGATCTAATTTCAAAGCTTGTGAGGGAATGTGAGAGCATAATCGATGCAGTGTTCCCAGCAGAGAAAGAAGCCGAGAGAGCAAAAGAAGCAATAACAGTAGCAGGAGAAGGGATATTCAGAAACACAGTTGCAGCTTTGCTCACAATGCAAGAGATGAGAAAAGGAAGCTCCACACAGAGCCCCTTCTCTCTGCCACCCCTCAACTTCCCTGACTCTGATCTCATCCGCTCAATACATCTTAATACAGCTGTTTCAATTGTCTAA 762 0.4383 MKFGKRLKQQIQESLPEWRDKYLSYKELKKLVRLISAATPTLEYGKNEADFMYLLNHEIDKFNAFFMEQEEDFIIRHMEVQQRIKRVVDLWGPNGSQPSEADYREEMARIRKDIVDFHGEMVLLVNYSNINYIGLAKILKKYDKRTKRLLRLPFIQKVLEQPFFTTDLISKLVRECESIIDAVFPAEKEAERAKEAITVAGEGIFRNTVAALLTMQEMRKGSSTQSPFSLPPLNFPDSDLIRSIHLNTAVSIV 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02048 253 PANTHER SPX DOMAIN-CONTAINING PROTEIN 3 1 250 IPR031142 GO:0016036
Cca01g02048 253 PANTHER SPX DOMAIN-CONTAINING PROTEIN 3 1 250 - -
Cca01g02048 253 CDD SPX_AtSPX1_like 2 145 - -
Cca01g02048 253 ProSiteProfiles SPX domain profile. 1 156 IPR004331 -
Cca01g02048 253 Pfam SPX domain 97 158 IPR004331 -
Cca01g02048 253 Pfam SPX domain 1 37 IPR004331 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02048 Cca-Chr1 47594505 47597897 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02048 - - gmx:100778590 428.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g02048 01 47594505 47597897 Cca01g02048 01 47594505 47597897 ECH