Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02044 ATGTGGATGCAGCATGCGCCACCCCTGAAACTGTTCCTTTCTTCTTCAAATGAAACAAAAGTCCCATCTTTTGGGGTGACTCAGAACGGTAAAAGCAGAGTAAAGGCAATAACTTTGGATGAACTTCCCCCAAACGCGCTTCGGAGGAAGAGAGAACCGCAATGGAGAGGAGGCTTCAGCCTTGGACTCGACTTGGGGTTGGCTCGCACTGGCCTTGCCCTCAGCAAAGGCTTCTCCATTCGTCCTTTAACCGTTTTGGAACTACGAGGAGAGAAGCTTGAGGTCAAGATTATTAACATTGCTGGACAAGAGGAGGTTGATGAGTTTATAATTGGACTTCCAAAATCTTTTGATGGGAAGGAAACACCGCAGTCGAATAAAGTCCGAAGTGTTGCTGGAAGGCTTGCTGTTCGAGCTGCTGAGAGGGGTTGGAGAGTATATCTACAGGATGAACGTGGGACAACAAAAGAAGCCGTAGATCGAATGATCAATATGGGGTTAAGTAAGTCCTCTCAGCAGAAGAAACTTGATGCCTATGCTGCCATGATGGTACTAGAGAAATATTTCTCCTCGTCAGGTCAGGGTATTGAACTTGTTTTGCCCAAGAATCTAGAATTACAAGCAAAACTTCAAAGGGGTCCTCCTAAAGATGAAAAGAGAAAGATACTCCAACCAAACCCGCTCCTCTTCACCCTCCCCAGCTTCAACCCCACTGCTCTCGGTCCCGCTCTGGGAGAATCCTATGATATATCAAGACTTGGAATGATTTTTGGAACCAGAACAGAGTGGAAGTTTGTTTCATCTCTGTTTGTTTTGTTCTTCACGTCTAGCTTTCCACCATTACAGGATGCAACAAGTTGGATTGACTTGATCGCTTGTTGA 882 0.4569 MWMQHAPPLKLFLSSSNETKVPSFGVTQNGKSRVKAITLDELPPNALRRKREPQWRGGFSLGLDLGLARTGLALSKGFSIRPLTVLELRGEKLEVKIINIAGQEEVDEFIIGLPKSFDGKETPQSNKVRSVAGRLAVRAAERGWRVYLQDERGTTKEAVDRMINMGLSKSSQQKKLDAYAAMMVLEKYFSSSGQGIELVLPKNLELQAKLQRGPPKDEKRKILQPNPLLFTLPSFNPTALGPALGESYDISRLGMIFGTRTEWKFVSSLFVLFFTSSFPPLQDATSWIDLIAC 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02044 293 PANTHER POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN 26 221 IPR005227 GO:0006364
Cca01g02044 293 SUPERFAMILY Ribonuclease H-like 59 191 IPR012337 -
Cca01g02044 293 PANTHER POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN 26 221 - -
Cca01g02044 293 CDD YqgF 61 191 IPR005227 GO:0006364
Cca01g02044 293 Hamap Putative pre-16S rRNA nuclease [yqgF]. 58 193 IPR005227 GO:0006364
Cca01g02044 293 TIGRFAM RNAse_H_YqgF: putative transcription antitermination factor YqgF 61 189 IPR005227 GO:0006364
Cca01g02044 293 SMART rnase_8s 58 158 IPR006641 GO:0006139
Cca01g02044 293 Pfam Holliday junction resolvase 60 190 IPR005227 GO:0006364
Cca01g02044 293 Gene3D - 60 196 IPR037027 GO:0006139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02044 - - ccaj:109818616 426.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g02044 01 47521945 47526420 Cca01g02044 01 47521945 47526420 ECH