Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02043 ATGGATTATTCGGGCTAcaactaccagcaccaaccgcaacatcaacaacaTTCCTATGGCTACGACCCTTCTCAGATCCAAATCCAACCCTACGATCAATCCTATGCCTATCAACAATACTACGCCTACAATCCCCAATACGCCTATTTCCCCAACACACACCAACCCCAATTTCAATACCAACCCGAACCCCCTCCTCTTCACCCTCCCGGCGTCAACCCCACCGCCCCCGAACCCGCTCCGACTGGGCCATCACAATACAGAGGTAGGGGTGGCAGGGGTGGTAGACCATTTAGAGGGGCTGGTCGTGGTCGAGGCCATGGTAGGGGACATGGTGTGGGTGGTGGTAGGCACGTACCATCCCATTCTTCTGGACCTGCAATTTCTAATCTGCCAGGTGCACCTGTTGCTGCTGGGGCTACTTCAGTGGTAGAACCGTCATCATCTGTCTCTGTGCAAAAGCAATTACCTAAACCAGCTCGAGTGCAACCACCAGTACCACCACGGAAAGCATGTTGTGAAATTTGTAAGGTTGAGTGCAATACTCCAGAAATTTTGGAGCAACACAGGAATGGGAAGAAACATCAGAAGAATATGAGGGTGCATGAAGAATTGCAAAGGCGCAATGCTATAAATGGACAACAGAGTGGACAGATTCCTACTTCTGAATTGAATTTAACAGATCAACCTGAGAAAGTTCAGGAGTCTGAGAAAAATGGACCCCCCAAACAAAATATGGCCACTGGGGTTATTGTTGATAATCACAAGAAGGAAATACAGCTGCAGAATAATGCAGGAAACATATCTGAGGTTCCAGCTGAAGTGCCTGAAGGGAAAACCATAGATAACTCTGCTGCAGGAAGCCGAGGATTGAAGCGGAAGAAGAAAGGAGGAAAAGGAGTTAAATACATGAGAACTAATGATGGTTCAAAGGCAGTGGAACCTGCACAAACTGTGTCCTTTAAATGTGAGCTGTGTGATGTTAAATGTGAGTCACAAGTTGTTTACCAGAGTCATGTGACCGGAAGAAAGCACTTATCAAGATTAAGGCGTGCTCATGAATACCAAGCTTCATCTGGAGTAGGCCAGCAGCAACCTCTATCTGGAGCGCACTTGGGGCTTCAAGCACTTTACCCAACTGACATCAATGCTCTGTCTAATGCAATTAATGCTCAAGTCCAACAAGGTGATAATGATCCACAGGTACTTTTGGCTCAACTCCTGATGACTGTGCTATCGCAAGGACAAGTTCCAGCAACAGCACCATTGGCAGGTGCCGTGGCTGCTCAGGTGCCAGCACCCACATCTATGGCTGGACCGAGTTATGAACCCCAGTTGTTGCAGACACAAGTATCCGGAATCACAGCACATGTTCAGATGGAGAATTCTTCTGGGGGAACAAAATCTGAGCTGTTACCTGTCCCACTGGGGTCAAACACTCAGCCAGGTTCAAGTGTCAGCACCCAGATTGAAGGTGGAGGTTCTGAAACTAAACAACAGGTGTAA 1506 0.4675 MDYSGYNYQHQPQHQQHSYGYDPSQIQIQPYDQSYAYQQYYAYNPQYAYFPNTHQPQFQYQPEPPPLHPPGVNPTAPEPAPTGPSQYRGRGGRGGRPFRGAGRGRGHGRGHGVGGGRHVPSHSSGPAISNLPGAPVAAGATSVVEPSSSVSVQKQLPKPARVQPPVPPRKACCEICKVECNTPEILEQHRNGKKHQKNMRVHEELQRRNAINGQQSGQIPTSELNLTDQPEKVQESEKNGPPKQNMATGVIVDNHKKEIQLQNNAGNISEVPAEVPEGKTIDNSAAGSRGLKRKKKGGKGVKYMRTNDGSKAVEPAQTVSFKCELCDVKCESQVVYQSHVTGRKHLSRLRRAHEYQASSGVGQQQPLSGAHLGLQALYPTDINALSNAINAQVQQGDNDPQVLLAQLLMTVLSQGQVPATAPLAGAVAAQVPAPTSMAGPSYEPQLLQTQVSGITAHVQMENSSGGTKSELLPVPLGSNTQPGSSVSTQIEGGGSETKQQV 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02043 501 MobiDBLite consensus disorder prediction 147 167 - -
Cca01g02043 501 SMART c2h2final6 171 195 IPR013087 -
Cca01g02043 501 SMART c2h2final6 321 345 IPR013087 -
Cca01g02043 501 MobiDBLite consensus disorder prediction 1 20 - -
Cca01g02043 501 MobiDBLite consensus disorder prediction 210 229 - -
Cca01g02043 501 SUPERFAMILY beta-beta-alpha zinc fingers 317 352 IPR036236 -
Cca01g02043 501 MobiDBLite consensus disorder prediction 58 81 - -
Cca01g02043 501 MobiDBLite consensus disorder prediction 278 306 - -
Cca01g02043 501 MobiDBLite consensus disorder prediction 462 501 - -
Cca01g02043 501 Pfam Zinc-finger of C2H2 type 321 345 - -
Cca01g02043 501 Pfam Zinc-finger of C2H2 type 173 195 - -
Cca01g02043 501 MobiDBLite consensus disorder prediction 52 133 - -
Cca01g02043 501 Gene3D Classic Zinc Finger 149 204 - -
Cca01g02043 501 Gene3D Classic Zinc Finger 301 352 - -
Cca01g02043 501 MobiDBLite consensus disorder prediction 210 245 - -
Cca01g02043 501 PANTHER OS06G0651300 PROTEIN-RELATED 1 74 - -
Cca01g02043 501 PANTHER OS06G0651300 PROTEIN-RELATED 78 463 - -
Cca01g02043 501 PANTHER GLUTENIN, HIGH MOLECULAR WEIGHT SUBUNIT 12-LIKE 1 74 - -
Cca01g02043 501 PANTHER GLUTENIN, HIGH MOLECULAR WEIGHT SUBUNIT 12-LIKE 78 463 - -
Cca01g02043 501 SUPERFAMILY beta-beta-alpha zinc fingers 166 203 IPR036236 -
Cca01g02043 501 SMART ZnF_U1_5 318 352 IPR003604 GO:0003676|GO:0008270
Cca01g02043 501 SMART ZnF_U1_5 168 202 IPR003604 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02043 Cca-Chr1 47515305 47520273 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02043 - - gmx:100794880 604.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g02043 01 47515305 47520273 Cca01g02043 01 47515305 47520273 ECH