Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02004 ATGTCACGTACTTTATCACAAGGCATCATGGAGGGAAGAGTGGGGCTATTGTTTCTTATTTTGTTGGGTGCTGCTTGGGCTTGTGATGCAAGAGGGCTAGCAAACTATGAATTAAACAGAAAATCAGAATCAGATGTCTGTGCACTTTGTGAGGAATATGCTACCGAGGCACTTGATTATCTAAATGATAAAGAGAACCAGAGAAAGATCATTGATGCCCTTCACAATACTTGCTATCAGCTACTCTCTTTCAAGCAGCAGTGCATCGAATTGGTGGATGATTATGCATCACATTTCTTCTCAGAAATCGCATCAGTTCTGCCTGGAGAACTCTGCAAACAGGTCCACCTCTGCCAATCTGCAAACGTTTCTTCACAAGTTAAAGGAAATAGCTGTGGCTCTTGCAAAGATTCTGTTGCAGCCTTATTGGTTAAGTTGAATGATCCTGACACCAAGCTTGAGATAATAGAGGCACTATTGACGGCATGCAATTCTATGGAGAAGATGGAGAAGAAGTGCAAGAGGATGGTTTTTGAGTATGGACCTATGATTCTAGTCAAGGCAGAGAAGTTCCTGAAAACAACAGATATATGCACTGTATTACATGCCTGCCCAGCTTCCATTGCAGTTAGTTCGGAAGCCTCATCCATGGAAGAAGTACCTTTGATTTCTGATTCTTAA 681 0.4185 MSRTLSQGIMEGRVGLLFLILLGAAWACDARGLANYELNRKSESDVCALCEEYATEALDYLNDKENQRKIIDALHNTCYQLLSFKQQCIELVDDYASHFFSEIASVLPGELCKQVHLCQSANVSSQVKGNSCGSCKDSVAALLVKLNDPDTKLEIIEALLTACNSMEKMEKKCKRMVFEYGPMILVKAEKFLKTTDICTVLHACPASIAVSSEASSMEEVPLISDS 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02004 226 Pfam Saposin-like type B, region 2 86 118 IPR008138 -
Cca01g02004 226 Pfam Saposin-like type B, region 2 171 204 IPR008138 -
Cca01g02004 226 SMART sapb_4 45 118 IPR008139 -
Cca01g02004 226 SMART sapb_4 130 204 IPR008139 -
Cca01g02004 226 PANTHER SAPOSIN-RELATED 10 213 - -
Cca01g02004 226 Pfam Saposin-like type B, region 1 45 81 IPR007856 GO:0006629
Cca01g02004 226 PANTHER SAPOSIN-RELATED 10 213 - -
Cca01g02004 226 SUPERFAMILY Saposin 44 120 IPR011001 -
Cca01g02004 226 ProSiteProfiles Saposin B type domain profile. 43 122 IPR008139 -
Cca01g02004 226 Gene3D - 42 119 - -
Cca01g02004 226 Gene3D - 127 207 - -
Cca01g02004 226 ProSiteProfiles Saposin B type domain profile. 128 208 IPR008139 -
Cca01g02004 226 SUPERFAMILY Saposin 130 206 IPR011001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02004 Cca-Chr1 46862659 46866962 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02004 K12382 - gmx:100527899 335.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g02004 01 46862659 46866962 Cca01g02004 01 46862659 46866962 ECH