Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02000 ATGCGGAGGTGCATCAATGGAAGAAATGCCAGAAGATTTTTATCCTCTTCTTGTGCCAGTGCTCGTGGTTGGTGGGACCATGTGAGACCAGTACCAAAGGACCCTATTGTCAGTGTTAACGAGGCCTTTCTGGCTGACCCTTTTCCCCACAAGATCAATCTTGGAATTGGAAATTACAGGGGGGACGATGGAAAACCTTTCACTCCTCAATGCGTTCGTGATGCAGAAACGAAGATTCAGAGATGTAAATTGGAGGAATCAAACTCTTCAGCTGTCAGATCAAAATTTGTTCAGGAGTGTGTAAGATTGGCATATGGGAATGATTCGTATGTTGCAAGAGAAGGATTGTTTGCAGGAGTTCCAACTCTGTCTGGAACAGGTGCATGTAGGCTTTTTGCTGAATTTCAAAGGCATTTCTATCCTGAATCTCAAATGTATCTACCAGATCCTACCTGGTCAAATCACCATAATATATGGAGACAGGCTGAAATTCCAGTCAAAACCTTCCACTACTACCATCCAGACACAAGGGGTTTAGATTTTGCTGCTCTCCTAAATGATGTCAAGAATGCACCAGATTGTTCTTTCTTCTTGCTACATCCATGTGCCCACAACCCAACTGGTGTTGACCCCAATGAGGAACAATGGAGAGAAATATCATACCAGTTCAAGGTAAAAAATCATTTCCCCTTCTTTGACATGGCCTATCAAGGATTTTCAAGTGGGGATCTTGACAAGGATGCAATAGCACTTCGAATTTTCCTTGAAGATGGGCATTTGATTGGATGTGCTCAATCATTTGCAAAGAACATGGGATTATCTGAACATAAAGTTGGTTGTCTTAGTGTTTTGTGCCAGAGTATAAAGCAAGTAGCTGCATTAAAAAGCCAACTGCAGCTGATGTCCCATGCAATGTATAGCAGCATTCCTTTTCATGGTATTTCACTAGTTACAATGATATTAAGCAATCCAGATATAGAAGCACTTTGGAGGAAAGAGATAAATGTCATGGCTAAACGGATTCAGACTATGCGTACTACCTTGCGGCATTCTCTTGAAAAATTGGATTCATCTTTCAACTGGGAGCATATAACTGCCCAGGTTGGCATGTTCTGTTTTTCTGGATTAACCCTTGATCAGGTTAAACAGCTGGAAAAGCTGTTCCATATATACATGACTCCTGATGGAAGAATAAGCATGGCAGGTGTGACCACAGGCAATGTGGATTATTTGGCAAATGCAATACATCAGGTGACCAGAATCGATGAAGAAGTCTTAAGATCATGTTACATTTAG 1296 0.4144 MRRCINGRNARRFLSSSCASARGWWDHVRPVPKDPIVSVNEAFLADPFPHKINLGIGNYRGDDGKPFTPQCVRDAETKIQRCKLEESNSSAVRSKFVQECVRLAYGNDSYVAREGLFAGVPTLSGTGACRLFAEFQRHFYPESQMYLPDPTWSNHHNIWRQAEIPVKTFHYYHPDTRGLDFAALLNDVKNAPDCSFFLLHPCAHNPTGVDPNEEQWREISYQFKVKNHFPFFDMAYQGFSSGDLDKDAIALRIFLEDGHLIGCAQSFAKNMGLSEHKVGCLSVLCQSIKQVAALKSQLQLMSHAMYSSIPFHGISLVTMILSNPDIEALWRKEINVMAKRIQTMRTTLRHSLEKLDSSFNWEHITAQVGMFCFSGLTLDQVKQLEKLFHIYMTPDGRISMAGVTTGNVDYLANAIHQVTRIDEEVLRSCYI 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02000 431 Gene3D Aspartate Aminotransferase, domain 1 28 415 IPR015422 GO:0003824
Cca01g02000 431 SUPERFAMILY PLP-dependent transferases 24 420 IPR015424 -
Cca01g02000 431 PRINTS Aspartate aminotransferase signature 197 216 IPR000796 GO:0006520|GO:0008483
Cca01g02000 431 PRINTS Aspartate aminotransferase signature 228 240 IPR000796 GO:0006520|GO:0008483
Cca01g02000 431 PRINTS Aspartate aminotransferase signature 296 321 IPR000796 GO:0006520|GO:0008483
Cca01g02000 431 PRINTS Aspartate aminotransferase signature 364 382 IPR000796 GO:0006520|GO:0008483
Cca01g02000 431 Pfam Aminotransferase class I and II 50 415 IPR004839 GO:0009058|GO:0030170
Cca01g02000 431 Gene3D - 82 323 IPR015421 GO:0003824
Cca01g02000 431 CDD AAT_like 52 417 - -
Cca01g02000 431 PANTHER ASPARTATE AMINOTRANSFERASE 14 423 IPR000796 GO:0006520|GO:0008483
Cca01g02000 431 PANTHER ASPARTATE AMINOTRANSFERASE 14 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02000 Cca-Chr1 46795080 46799486 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02000 K14455 - gmx:100814593 822.002
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g02000 01 46795080 46799486 Cca01g02000 01 46795080 46799486 ECH