Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01965 ATGGCAACCCACTTCCTCATTCTCTCCCTTCTCATTTCTTACCACCTCCTCACTTTCACTGTAGCCGAAGAAACCGGCTTCGTGGGCTCACTAGACCGCGGAAAATTGGGCCTGGCCCAAAAAGACAAGGTGAGCCATTTCCGGTTCTACTTCCACGAGCAGTTCACCGGAACCAACGCCACCTCCGTCACCGTGGTGGCGCCGCTCCCAAAGTACAACTCCACCACCAACTTCGGCATGGTGGGCATCACTGACAACGCCCTGACGGTGGGACCCGACCGCGCCTCCAAGGTTGTCGGAAGAATCGAGGGTCTGTATGCTGCCACGTCGCAGTCGGAGTTCAACCTGTTGGTGGTTGTCAACTTTGCGTTAACTGAAGGGAAGTACAACGGAAGCACCATCGCCGTGTTGGGGCGGAACCGCCTCTCCCAGAAGGTGAGGGAGATGCCGGTGATCGGAGGAAGTGGGGTGTTTAAATTTGCGACGGGGTACGTTGAAACCAGCACTCTCTACCTTGATTCGGATAGGTCTACAATTGAGTACAACATTTATGTTGCACATTATTGA 567 0.5432 MATHFLILSLLISYHLLTFTVAEETGFVGSLDRGKLGLAQKDKVSHFRFYFHEQFTGTNATSVTVVAPLPKYNSTTNFGMVGITDNALTVGPDRASKVVGRIEGLYAATSQSEFNLLVVVNFALTEGKYNGSTIAVLGRNRLSQKVREMPVIGGSGVFKFATGYVETSTLYLDSDRSTIEYNIYVAHY 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01965 188 PANTHER NUCLEOPORIN-RELATED 7 187 IPR004265 -
Cca01g01965 188 PANTHER DIRIGENT PROTEIN 7 7 187 - -
Cca01g01965 188 Gene3D - 33 186 IPR044859 -
Cca01g01965 188 Pfam Dirigent-like protein 45 185 IPR004265 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01965 Cca-Chr1 45918975 45919873 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01965 - - gmx:100500484 313.923