Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01912 ATGAAGCAATCAAAGGATCCATTCGAAGCAGCATTCGAGGAATCTCCGCCGGAGTCCCCGGTGGAGACGGAGGCAGAGGCGGATACGCCAAACCCTCCTTCGTCTTCGGCGCCACCGCTTCCACAGCCTCAGAAGGTGAGCGCCACcaaggacaaagacaaagacaaagacaaggacaaggacgaggaagaggaggaggaagaagaCAACATGGACGTGGAGCTTGCGAAGCTTCCTTCCGCTGGTGACCCTCACAAAATGGCCAAGATGCAGGCGATTCTCTCCCAATTCACCGAAGACCAGATGAGTAGATACGAGTCCTTCCGCAGGGCTGGCTTTCAGAAAGCTAACATGAAAAGGTTATTGGCTAGCATCACTGGGACCCAGAAAATTTCAGTGCCAATGACGATTGTGGTATCAGGCATTGCAAAACTGTTTGTTGGTGAAGTTGTTGAAACAGCTAGAATAGTTATGAAAGAGAGGAAGGAATCTGGAACAATCCGGCCTTGTCATCTGAGAGAAGCATATAGACGACTAAAGCTTGAAGGTAAAGTCTTCAAGAGATCAGCCTCGAGACTCTTCCGGTAG 588 0.4524 MKQSKDPFEAAFEESPPESPVETEAEADTPNPPSSSAPPLPQPQKVSATKDKDKDKDKDKDEEEEEEEDNMDVELAKLPSAGDPHKMAKMQAILSQFTEDQMSRYESFRRAGFQKANMKRLLASITGTQKISVPMTIVVSGIAKLFVGEVVETARIVMKERKESGTIRPCHLREAYRRLKLEGKVFKRSASRLFR 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01912 195 PANTHER TAFII28-LIKE PROTEIN-RELATED 1 195 - -
Cca01g01912 195 Gene3D Histone, subunit A 97 186 IPR009072 GO:0046982
Cca01g01912 195 Pfam hTAFII28-like protein conserved region 93 178 IPR006809 GO:0005634|GO:0006367
Cca01g01912 195 MobiDBLite consensus disorder prediction 1 74 - -
Cca01g01912 195 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 11-RELATED 1 195 IPR045127 GO:0005669|GO:0006367|GO:0051123
Cca01g01912 195 CDD TAF11 97 180 IPR006809 GO:0005634|GO:0006367
Cca01g01912 195 SUPERFAMILY Histone-fold 97 185 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01912 Cca-Chr1 44790195 44791812 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01912 K03135 - gmx:100305481 254.603