Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01891 ATGCTTGGTGAGATTGGATTGAAGAACACGGAGTTCTTGTCCGACATTGTGCCCGTGCTGATTAACGGATTGGATGACGACACGCCTGCGGTTGTGCGGCAAGCTATACTGTGCGGAATTGACTTGTTTCGCAGCACGCTTGAGAAAATCACGGTTCAGGGTCTATATTCTAGTGATTTAGATGGTGCACTTGAATCTGCATGGGCATGGATGCTTAAATTCAAAGACAAAGTATATGAAATAGCTTTTGAACATGGAAGTGGTGGTGCAAAGCTGCTGGCACTGAAGTTTGTTGAGGTAGTTATTCGTCTTTACACGCATGATTCCAATGGTTCCTCTGAACCCACTTCTCATCAAGGAAGGCCTGTAGAATTTAATATATCATGGGTCAAGCGGGGTCATCCTGTACTTAATTATGTAGATTTGTCAATTGAAGCCAGCCATCGTTTGGGTCTCTTGCTTGATCAACTCAGATTTCCAACTGTGAAGTCCCTTAGTAATTCGGTGATCATTGTTCTGATCAAAAGTCTTTCAGGCATTGCAATTGACAGGCCTGCCTTCTATAGCCGCATCTTGCCTGTTTTGCTTAGTTTGGAACCTTCCAGCTCTGTTGTTAATGGTGTATGTGTAACAGCTGCACATCTTGCTTTGAAGAATGCCTTTCTTGCTTGCTCAAAATGTACACATCCAAGTGCTGCTCCGTGGAGAGATCGTTTGGCAGGTGCCTTGAAGGAAATGCAGTCAGAAGGAAAGGCAGATCGGGTGTTTCACCTAATCTCTGCAAGTAATGGAAGCACAGAGAGAGAGAATGATGAACCTGTTATCATGGAAGAGGAACCTGCAGTTAATTCTCGTGATTCAGTGAACAGTAATTTGGCAAGAAAACGATCAGGATCGCAAACTGGAAGTGATTTAGCTGAAGGTGTTCCTGGAAAACGTGTCAGGACAACAATTGTTGCTTTGGAAGGACCTAAGAAAGAGCTAGATGACTGTACCACTGCCAACTCTCAGGATGAGACTCCTTCAACTGTGCCAACATCATCAAAAGAAGATGTGGATAATGGGCCTGTACAACAACTTGTTGCCACCTTTGGCGCTTTGATTGCTCAAGGTGAAAAAGCTGTTGTACATTTGGAAATTCTCATCTCTAGTATTTCTGCTGACTTGCTAGCTGAGGTGGTGATGGCAAATATGCGAAACCTACCTCCAAATTACCCTAATGCTGAAGAAAATGATGAACAGCTGCAAGACATTAGTATGATTGGTTCTGATGACAAGGCTAAATATCCACCATCATTTGTAGCTGGTGTTATGTCACTTTCTAGTACTTTTCCTCCAATAGCTTCCCTTCTTGATGCTCATCAATCAGTGTCTAATGAGGTAGTGAAGTCACAAGGGGAGGAAGAAATTTCAGCAGCTGCTCCAAATAGTGATGCTGTGCATTCTGGCATGAATCTTGTATCTGAAAATATACCATCACCTACTGATTTTCCATCTTCTGATGCCAGTATACCTGGAGTAGAGAATGACTGCACAACTATGCCTACTGACATCCATGATGTTGGAAACTCAGAGAGTGGAATCCCTGGCCTAGAATCTTTTGGTCATAATGATGCTTTGTCACAAAGTTTGGCTCCTTCCTTATTGGCTTCCTCTGAAATGCACCTAGAAGATAGCAGTCAAGAGCAAGATACAAGCTTGGATCAAAGCCCAAAAGCGGCTGTTAAAGATGTCAATAGCTTGGTGTCCTCAACAGCTACTTCAGTTGTGTTGCCTACCCGTTTAGTCTTGCCAAAGATGATTGCTCCTGTTGTTGATCTTGCAGATGAACAAAAGGATCATTTGCAGAAGTCATGTTTTATGCGTATTATCGATACATATAAGCAAATAACTGTAGCTGGAGGCTCCAAAATCCGTTTTTCGATACTTACATATTTAGGAGTTTATTTTCCCTTGGAATTAGACCCATGGAAGTTATTACAAAAGCATATTTTGATTGATTACACTAGTAATGAGGGACATGAGTTGACATTGCGTGTCCTCTACAGATTATTTGGTGAGGCTGAAGAGGAGCCTGACTTCTTTTCTTCCACAACTGCAGCTTCTGTATATGAAAAATTCCTCCTGACAGTGGCAGAAGCACTTAGAGATTCCTTTCCACCTTCAGATAAATCATTAAGTAAATTGCTTGGTGATTCTCCTTATTTACCTAAATCAGTTCTGAAAATTTTAGAAAACATGTGTTCTCCTGGAAATGGGGATAAAGGTGAAAAGGAGTTACACTCACTGAATGCTGATAGAGTTACTCAAGGTCTAAGTGCTGTATGGAGCTTGATTCTTCTAAGGCCTCCCATTCGAGATACTTGCTTACAAATTGCTCTACAGAGTGCAGTGCATCACTTGGAAGAAGTGCGTATGAAGGCGATACGTCTGGTGGCAAATAAGCTCTATCCTTTGTCATCCATTTCTCAGCAAATAGAAGATTTTGCGAAGGAAAGGCTTTTTTCAGCAATGAGTGGTGATGCATCTGATGCTATGAACGCAGAAGGGTCCATTGCTGATTCACAGAAGGGACCTGAATCTGAAAAGCCAAATGAACAATCATCATTGAGTGGCAGCACTAAAGATGTCTCCTCAGATAATCATCAATCATGCACATCTGAGAGTGTCTCACCAGATTCAGTTTCTGAGGCTCAGAGGTGCATGTCATTGTATTTTGCTTTGTGTACAAAGAAACATTCTCTCTTCCGCCAAATATTTGTCATCTATAGAAGCACATCAAAGGCAGTGAAGCAGGCAGTACATCGCCAAATTCCAATACTTGTACGTACTATGGGCTCATCTTCAGATCTCCTTGAAATTATTTCAGATCCCCCAAATGGAAGCGAGAATCTTTTAATGCAGGTGTTGCACACACTTACAGATGGTACGACTCCTTCTAAGGATTTAATATGTACTGTGAAAAAGTTGTACGAATCAAAACTCAAGGATGCAGAGGTTCTTATTCCAATATTACCATTCCTAACAAATGATGAGGTAATGCCAATTTTCCCTCACATTGTAAATCTTCCTCTGGAGAAGTTCCAAGCAGCACTTGGTCGCATATTGCAGGGATCATCACAATCTAGTCCGGTGCTTACTCCTGCTGAAATTTTAATTGCAATTCATGGAATTGATCCTGAAAGGGACGGAATTCCCTTGAAAAAGGTCACAGACGCTTGCAATGCTTGCTTTGAGCTGCCGCAAACTTTTACTCAAGAAGTTATTGCCAGAGTTTTGAATCAGTTGGTTGAGCAGATTCCTCCTCCTTTACTATTCATGCGTACAGTATTACAAGCAATTGTTGCTTTTCCGACACTGGTGGACTTTATCATGGGGATTCTTTCTCGCCTTGTGATGAAGCAGATATGGAAATACCCTAAGTTGTGGGTAGGATTCTTGAAGTGTGTGCAGTTGACAAAACCACAGTCATTTGACATTTTGCTTCAGCAGCTGCCTCCAGCACAATTGGAAAATGCTTTAAATAGAATTGCAGCTTTGAAGCCACCATTGATTGCTCATGCTAGCCAGCCAGATATACAATCTAAACTTCCGAGGGCTGTGCTAGTTGTTCTGGGAATTGCTTCTGATTCTCAGGTTTCAAGTCAAGCACAAACTACTCAGACACAAACAAGTCAAACACAGACTACTCCCACACAGACTACTCAGACACAGACTACTGAGACTGAGACAAGCAACTCAGAGAAGGACACAATGACAGAAAAATCTAAAGAATCATCTACAGCGAGCTAA 3792 0.4185 MLGEIGLKNTEFLSDIVPVLINGLDDDTPAVVRQAILCGIDLFRSTLEKITVQGLYSSDLDGALESAWAWMLKFKDKVYEIAFEHGSGGAKLLALKFVEVVIRLYTHDSNGSSEPTSHQGRPVEFNISWVKRGHPVLNYVDLSIEASHRLGLLLDQLRFPTVKSLSNSVIIVLIKSLSGIAIDRPAFYSRILPVLLSLEPSSSVVNGVCVTAAHLALKNAFLACSKCTHPSAAPWRDRLAGALKEMQSEGKADRVFHLISASNGSTERENDEPVIMEEEPAVNSRDSVNSNLARKRSGSQTGSDLAEGVPGKRVRTTIVALEGPKKELDDCTTANSQDETPSTVPTSSKEDVDNGPVQQLVATFGALIAQGEKAVVHLEILISSISADLLAEVVMANMRNLPPNYPNAEENDEQLQDISMIGSDDKAKYPPSFVAGVMSLSSTFPPIASLLDAHQSVSNEVVKSQGEEEISAAAPNSDAVHSGMNLVSENIPSPTDFPSSDASIPGVENDCTTMPTDIHDVGNSESGIPGLESFGHNDALSQSLAPSLLASSEMHLEDSSQEQDTSLDQSPKAAVKDVNSLVSSTATSVVLPTRLVLPKMIAPVVDLADEQKDHLQKSCFMRIIDTYKQITVAGGSKIRFSILTYLGVYFPLELDPWKLLQKHILIDYTSNEGHELTLRVLYRLFGEAEEEPDFFSSTTAASVYEKFLLTVAEALRDSFPPSDKSLSKLLGDSPYLPKSVLKILENMCSPGNGDKGEKELHSLNADRVTQGLSAVWSLILLRPPIRDTCLQIALQSAVHHLEEVRMKAIRLVANKLYPLSSISQQIEDFAKERLFSAMSGDASDAMNAEGSIADSQKGPESEKPNEQSSLSGSTKDVSSDNHQSCTSESVSPDSVSEAQRCMSLYFALCTKKHSLFRQIFVIYRSTSKAVKQAVHRQIPILVRTMGSSSDLLEIISDPPNGSENLLMQVLHTLTDGTTPSKDLICTVKKLYESKLKDAEVLIPILPFLTNDEVMPIFPHIVNLPLEKFQAALGRILQGSSQSSPVLTPAEILIAIHGIDPERDGIPLKKVTDACNACFELPQTFTQEVIARVLNQLVEQIPPPLLFMRTVLQAIVAFPTLVDFIMGILSRLVMKQIWKYPKLWVGFLKCVQLTKPQSFDILLQQLPPAQLENALNRIAALKPPLIAHASQPDIQSKLPRAVLVVLGIASDSQVSSQAQTTQTQTSQTQTTPTQTTQTQTTETETSNSEKDTMTEKSKESSTAS 1263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01891 1263 MobiDBLite consensus disorder prediction 334 353 - -
Cca01g01891 1263 PANTHER PHOSPHATIDYLINOSITOL 3-AND 4-KINASE FAMILY PROTEIN-RELATED 1 1148 - -
Cca01g01891 1263 Pfam Symplekin/PTA1 N-terminal 29 247 IPR032460 -
Cca01g01891 1263 MobiDBLite consensus disorder prediction 862 892 - -
Cca01g01891 1263 MobiDBLite consensus disorder prediction 261 311 - -
Cca01g01891 1263 PANTHER SYMPLEKIN/PTA1-RELATED 1 1148 - -
Cca01g01891 1263 MobiDBLite consensus disorder prediction 851 892 - -
Cca01g01891 1263 MobiDBLite consensus disorder prediction 324 353 - -
Cca01g01891 1263 Gene3D - 1 272 IPR011989 -
Cca01g01891 1263 MobiDBLite consensus disorder prediction 283 304 - -
Cca01g01891 1263 MobiDBLite consensus disorder prediction 552 572 - -
Cca01g01891 1263 MobiDBLite consensus disorder prediction 1215 1246 - -
Cca01g01891 1263 Pfam Symplekin tight junction protein C terminal 997 1176 IPR022075 -
Cca01g01891 1263 MobiDBLite consensus disorder prediction 1215 1263 - -
Cca01g01891 1263 SUPERFAMILY ARM repeat 10 1134 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01891 Cca-Chr1 44215701 44228475 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01891 K06100 - gmx:100779360 2041.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g01891 01 44215701 44228475 Cca01g01891 01 44215701 44228475 ECH