Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01879 ATGGGAAAGCCTGTTTGGGGAACCTGTGCAGGGCTTATATTCTTGGCAAATAAAGCTGTAGGACAGAAGACTGGTGGACAACATCTGGTTGGTGGACTTGATTGTACAGTGCATAGAAATTTCTTTGGCAGCCAGATTCAAAGCTTTGAGGCAGAGCTTTCAGTGCCAGAGCTCACCTCCAAGGAAGGTGGTCCTGAAACATTTCGTGGGATTTTTATTCGTGCACCTGCAATTCTTGAAGCAGGGCCTGAAGTTCAAGTGCTGGCTGATTATCCTGTATCTTCTAACAGATTGTTGAATTCTGATTCCTCTGTTGAAGACAAAACGGAAAATGCTGAGGAAGAAAGTAAAGTTATAGTTGCTGTGAGACAAGGGAACATACTAGGAACTGCTTTTCATCCTGAATTGACATCTGATACTCGATGGCATAGTTATTTTATAAAAATGTCAAATGAGATTATAGAAGAGGCCTCCTCAAGTAGCCTTGTTCCTGCACAAGTCGGTACAAGTCACAATCAACCATCTCTCAGTGACCTTCCTATCTATCAATAG 552 0.4239 MGKPVWGTCAGLIFLANKAVGQKTGGQHLVGGLDCTVHRNFFGSQIQSFEAELSVPELTSKEGGPETFRGIFIRAPAILEAGPEVQVLADYPVSSNRLLNSDSSVEDKTENAEEESKVIVAVRQGNILGTAFHPELTSDTRWHSYFIKMSNEIIEEASSSSLVPAQVGTSHNQPSLSDLPIYQ 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01879 183 ProSiteProfiles PdxT/SNO family profile. 1 151 IPR002161 GO:0004359|GO:0042819|GO:0042823
Cca01g01879 183 PANTHER PYRIDOXAL 5'-PHOSPHATE SYNTHASE SUBUNIT SNO 2 182 IPR002161 GO:0004359|GO:0042819|GO:0042823
Cca01g01879 183 PANTHER - 2 182 - -
Cca01g01879 183 SUPERFAMILY Class I glutamine amidotransferase-like 2 149 IPR029062 -
Cca01g01879 183 PIRSF Glut_amidoT_SNO 1 154 IPR002161 GO:0004359|GO:0042819|GO:0042823
Cca01g01879 183 ProSiteProfiles Glutamine amidotransferase type 1 domain profile. 1 159 - -
Cca01g01879 183 MobiDBLite consensus disorder prediction 164 183 - -
Cca01g01879 183 Gene3D - 1 161 IPR029062 -
Cca01g01879 183 Pfam SNO glutamine amidotransferase family 3 150 IPR002161 GO:0004359|GO:0042819|GO:0042823
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01879 Cca-Chr1 43851819 43856793 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01879 K08681 - gmx:100776337 311.612