Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01862 ATGTCATCGTCCTTTGGAAGCTCCGGCCAGCCGTTCCACGGCGACGGCGCCTTCGCTGGATACACGTTCTCCAACTTCGACGGCGACTCGCTCAAGGACTCGGCCGGTGACTCGTCCCCGATTTTCGGCGGCGCGTCGTACAACGCCGGAGAGGACGTGTTCTCCTCTCAGGCGGCTCCGGAGACTCCTTCTCCGCCATCGATCTACTCCGCCGCTGGGGGATTCGCTGCGTTCTCGCCGGAGCAGAACGGAGAGGGCGTAGGCGCAGGTTTCGGTGCCTCCGATGGCCCGATATTGCCGCCTCCGACGGATATGGCGGCGGAGGAGGGGTTTGCTCTGAGAGAGTGGCGAAGGCTGAATGCGATTCGATTGGAGGAGAAGGAGAAGAAGGAGAAGGAGATGCGGTTTCAGATTATAGAGGAAGCGGAAGAGTACAAAGTCGAGTTCTACAAAAAGCGTGATGTTAATGTTGAGAACAACAAGGCTTCGGGAAAGAGAGAAGCTGACAAAAACTACTGGAAGACAATTTGTGAACTTATTCCACAGGAAGTTCCTACAATAGAGAAGAGAGGGAAAAAGGACAAAGAGAAGAAGCCTTCTATTGTTGTCATTCAAGGGCCAAAACCAGGGAAGCCAACTGATCTTTCAAGAATGCGCCAGATATTATTGAAACTCAAGCATAATCTCCCTCCACATATGAAGCCCAAGCCTCTCCCATCGTCAGAAACCAAAAAGGATGCTAATACTGGACCTCCTGATGTAGCTAGTACAAGTACTCCTCCTCCCAAGGTTGTGCATGTGGCAACTCCTGAAGCTGTTGCTGCAGCTTGA 831 0.5283 MSSSFGSSGQPFHGDGAFAGYTFSNFDGDSLKDSAGDSSPIFGGASYNAGEDVFSSQAAPETPSPPSIYSAAGGFAAFSPEQNGEGVGAGFGASDGPILPPPTDMAAEEGFALREWRRLNAIRLEEKEKKEKEMRFQIIEEAEEYKVEFYKKRDVNVENNKASGKREADKNYWKTICELIPQEVPTIEKRGKKDKEKKPSIVVIQGPKPGKPTDLSRMRQILLKLKHNLPPHMKPKPLPSSETKKDANTGPPDVASTSTPPPKVVHVATPEAVAAA 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01862 276 MobiDBLite consensus disorder prediction 53 105 - -
Cca01g01862 276 Pfam Clathrin light chain 106 228 IPR000996 GO:0005198|GO:0006886|GO:0016192|GO:0030130|GO:0030132
Cca01g01862 276 PANTHER CLATHRIN LIGHT CHAIN 1 273 IPR000996 GO:0005198|GO:0006886|GO:0016192|GO:0030130|GO:0030132
Cca01g01862 276 Coils Coil 122 142 - -
Cca01g01862 276 MobiDBLite consensus disorder prediction 186 201 - -
Cca01g01862 276 MobiDBLite consensus disorder prediction 186 276 - -
Cca01g01862 276 PANTHER CLATHRIN LIGHT CHAIN 3 1 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01862 Cca-Chr1 43538226 43540301 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01862 - - aprc:113850159 449.129
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g01862 01 43538226 43540301 Cca01g01862 01 43538226 43540301 ECH