Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01856 ATGGCGTCACTACTCTTAGCATCACCTCCTCCACTCTCCATTCAATTGAACAATTCCTCTTCTCACCTTTCTTTCTCTCACTCCCAAACTCTCTCTTCACCGCTCTCCACTCCCTTTCCTTCCCTCTCAGCCTCTGCATCCTCCACTCTCACCCCAACCCCTTCTGTGTATTGTGGCAGAGGAGACAGAAAAACTGCAAAGGGTAAACGCTTCAACCATTCATTTGGAAATGCGAGGCCAAAGGACAAGAAGAAGAGTAGAGGGCCACCGAGGCTTTATGCACCACCGGCACCTTCGAAGAAAGACAAGTACGAGGATAATGAGGTGGTGAAGATTGAAATTGATGAGTCACTCTTTTCTGGCTGA 366 0.4836 MASLLLASPPPLSIQLNNSSSHLSFSHSQTLSSPLSTPFPSLSASASSTLTPTPSVYCGRGDRKTAKGKRFNHSFGNARPKDKKKSRGPPRLYAPPAPSKKDKYEDNEVVKIEIDESLFSG 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01856 121 TIGRFAM ribo_THX: ribosomal small subunit protein bTHX 59 83 IPR030826 GO:0005840
Cca01g01856 121 PANTHER 30S RIBOSOMAL PROTEIN S31, CHLOROPLASTIC 1 120 IPR044695 -
Cca01g01856 121 MobiDBLite consensus disorder prediction 62 89 - -
Cca01g01856 121 MobiDBLite consensus disorder prediction 1 106 - -
Cca01g01856 121 PANTHER 30S RIBOSOMAL PROTEIN S31, CHLOROPLASTIC 1 120 - -
Cca01g01856 121 MobiDBLite consensus disorder prediction 10 55 - -
Cca01g01856 121 Pfam Ribosomal protein S31e 1 102 IPR030826 GO:0005840
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01856 K19033 - gmx:100805197 164.851
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g01856 01 43381985 43382907 Cca01g01856 01 43381985 43382907 ECH