Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01853 ATGGGGCTGCAAGAAAACAGTTCAGAAAGAAAGACACCACCTGGTCATACTAAGAAGAAATTATGGCGGAGTAGTAAATATTTTTTCTTCGATAAGACCCTACCTTTGATTGGCGGTTTGGTTTCAGCCAACATATTTGTGCAAGTTGCGGTGGTGGTTATATTGATGGATTACCTCACAGATTCAGGGAAGGATCTACGGCTAGTTGTTCTCATAACAAATCTGCTAGATGGCCTATCATCTGTTTTTGTTGTCATTGTTTCTGCAATCACAGAAGCATATACTGGTTGCTTCATTATGATCATATTTTGCTGTGTATCTACCATCGAGGGTTTAATGCTACTATGGACATCTACATCACCTTCAACATTTGGATATGTCTACCCAGCAATATTCTTCTTGGCATTAGGTGCAAGAGGTCAAAAGCTTTCAGAAAATTTTCTTGAATATCAGTTGCGAGAGAAAATTGAAGCACAAAAGGAAAACGCACCAGAACATGGAAGCACGCAAAGGAAAGAAGAGGAAAACAAGGTGGATATAATGCGTAATATAATCTGGTTATTGGCTTCAAAGATTGTTGGATATATCGTAACACTGTCTATTGTCAATACGTTTGATGATGAAACGTACGGATTCCGTTTCAGACTTGCGGCACTTCTCATGGGAGGGATTTTTCTGTTATTCCTCATGGGTTATGTGTGGTATAGCCGCGAATTATTGACCGTTGAAAGCAATCTACGCAAGATCTATAGAATCTGCAAGGCAGCGTTTGGGAAACGCAAATCAAAGTATCCAACCTCACCGAGTTGTTATCATTGGAAAGGTTATAAGCAAGGGCATTTGTATGAACGTGGCAAAGGTAAAGGACTAAGGTTATTGCCTCGAGTTCCGCGACTATTCAGGTGGTTGGACAAAGCAGCTATAGTTGAAGTTGAAGGAGAAGAGTGTGGTGATCACGAAGTGCAAGAAAAGAATGGTAACCTTTGCATGGTAAAGGAAGTGAGGGAAGTGAAGAGCCTTGTTCCTATGATCTACCTTGGCTTTACTTTTTCTGCTTGTAGGTGA 1065 0.4056 MGLQENSSERKTPPGHTKKKLWRSSKYFFFDKTLPLIGGLVSANIFVQVAVVVILMDYLTDSGKDLRLVVLITNLLDGLSSVFVVIVSAITEAYTGCFIMIIFCCVSTIEGLMLLWTSTSPSTFGYVYPAIFFLALGARGQKLSENFLEYQLREKIEAQKENAPEHGSTQRKEEENKVDIMRNIIWLLASKIVGYIVTLSIVNTFDDETYGFRFRLAALLMGGIFLLFLMGYVWYSRELLTVESNLRKIYRICKAAFGKRKSKYPTSPSCYHWKGYKQGHLYERGKGKGLRLLPRVPRLFRWLDKAAIVEVEGEECGDHEVQEKNGNLCMVKEVREVKSLVPMIYLGFTFSACR 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01853 354 PANTHER OLIGOPEPTIDE TRANSPORTER-RELATED 44 351 IPR000109 GO:0016020|GO:0022857|GO:0055085
Cca01g01853 354 PANTHER PROTEIN NRT1/ PTR FAMILY 5.6-LIKE 44 351 - -
Cca01g01853 354 Gene3D MFS general substrate transporter like domains 4 354 IPR036259 -
Cca01g01853 354 SUPERFAMILY MFS general substrate transporter 10 137 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01853 Cca-Chr1 43340422 43341786 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01853 3 353 Organic Solute Cotransporters AT3G53960 21.180 3.54e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01853 - K14638 ccaj:109818666 352.829