Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01852 ATGGGGCTGCAAGAAAACAGTTCAGAAAGAAAGACACCACCTGGTCATACTAAGAAGAAATTATGGCGGAGTAGTAAATATTTTTTCTTCGATAAGACCCTACCTTTGATTGGCGGTTTGGTTTCAGCCAACATATTTGTGCAAGTTGCGGTGGTGGTTATATTGATGGATTACCTCACAGATTCAGGGAAGGATCTACGGCTAGTTGTTCTCATAACAAATCTGCTAGATGGCCTATCATCTGTTTTTGTTGTCATTGTTTCTGCAATCACAGAAGCATATACTGGTTGCTTCATTATGATCATATTTTGCTGTGTATCTACCATCGAGGGTTTAATGCTACTATGGACATCTACATCACCTTCAACATTTGGATATGTCTACCCAGCAATATTCTTCTTGGCATTAGGTGCAAGAGGTCAAAAGCTTTCAGAAAATTTTCTTGAATATCAGTTGCGAGAGAAAATTGAAGCACAAAAGGAAAACGCACCAGAACATGGAAGCACGCAAAGGAAAGAAGAGGAAAACAAGGTGGATATAATGCGTAATATAATCTGGTTATTGGCTTCAAAGATTGTTGGATATATCGTAACACTGTCTATTGTCAATACGTTTGATGATGAAACGTACGGATTCCGTTTCAGACTTGCGGCACTTCTCATGGGAGGGATTTTTCTGTTATTCCTCATGGGTTATGTGTGGTATAGCCGCGAATTATTGACCGTTGAAAGCAATCTACGCAAGATCTATAGAATCTGCAAGGCAGCGTTTGGGAAACGCAAATCAAAGTATCCAACCTCACCGAGTTGTTATCATTGGAAAGGTTATAAGCAAGGGCATTTGTATGAACGTGGCAAAGGTAAAGGACTAAGGTTATTGCCTCGAGTTCCGCGACTATTCAGGTGGTTGGACAAAGCAGCTATAGTTGAAGTTGAAGGAGAAGAGTGTGGTGATCACGAAGTGCAAGAAAAGAATGGTAACCTTTGCATGGTAAAGGAAGTGAGGGAAGTGAAGAGCCTTGTTCCTATGATCTACCTTGGCTTTACTTTTTCTGCTTATAGTTTACTTATGGCCACTGGGAACACTTTCTTTGTTGCACAAGCCAGCATCATGAAACCAGTTATTACAAAAAGTAATAGTAATGATATCTCTATTCTCTTTGTTATCAAGACCAGCGTGAAAGCTGTTTTAGGATCAATCTGCATTACTATTATCAAGACTTGTGAATTTCGAAGCTCGAAAAAATCGAAAAGAAAAGCAGGCACAATTATAAGGATTGGTTTGGGCCTGGTTTGTGCGGTAATTTGTAGTCTCGTGGCATGGAAAGTTGAGATACATAGGTTGTCGATAAACAAGGAGGGACATTTTAAACACGCTGGTGGAAACACGACAAGGGCTTTGGTTCCACAATTCTCGTTGTTAGGAATGACGGAGGGATTTGTTGATGGTGGATTATCGAGTTTATACCGTGACCAAGTAGCTGAATCATTGGGAAGTTTTGAGGAATCTTTTAGTGGGTTATTTATTGGTAGTGGCAAACTCTTGATTATACCACTTGTATTAATTATACGTAGCTGGTTCAAGGAAACTGTCAACACTAGTCGTTTGGATCTGTACTATCTGTTTATGGCAATATTGAACGCTGTGTTCCTTCTAGTTTTTGCATACTACTCCTCCAGATATGCCTACAAGGAAGAATTTCCCAAGGAAGATCCACCATACTCTGAGGAAAGCTCGGCAAATCAAGAACTAGCGGAGGTCACAGCGAATCAAATTTCGGAAAAAGATCTTCAAGAAGAATGTGATGGAAAGAGGTATGTCTCTGAGTCGACTCGAGGTGAGATTAGTGAGAATCAATTCCCACCAGCCAAGGCCACACGCAACTTTACTTATTAA 1896 0.4024 MGLQENSSERKTPPGHTKKKLWRSSKYFFFDKTLPLIGGLVSANIFVQVAVVVILMDYLTDSGKDLRLVVLITNLLDGLSSVFVVIVSAITEAYTGCFIMIIFCCVSTIEGLMLLWTSTSPSTFGYVYPAIFFLALGARGQKLSENFLEYQLREKIEAQKENAPEHGSTQRKEEENKVDIMRNIIWLLASKIVGYIVTLSIVNTFDDETYGFRFRLAALLMGGIFLLFLMGYVWYSRELLTVESNLRKIYRICKAAFGKRKSKYPTSPSCYHWKGYKQGHLYERGKGKGLRLLPRVPRLFRWLDKAAIVEVEGEECGDHEVQEKNGNLCMVKEVREVKSLVPMIYLGFTFSAYSLLMATGNTFFVAQASIMKPVITKSNSNDISILFVIKTSVKAVLGSICITIIKTCEFRSSKKSKRKAGTIIRIGLGLVCAVICSLVAWKVEIHRLSINKEGHFKHAGGNTTRALVPQFSLLGMTEGFVDGGLSSLYRDQVAESLGSFEESFSGLFIGSGKLLIIPLVLIIRSWFKETVNTSRLDLYYLFMAILNAVFLLVFAYYSSRYAYKEEFPKEDPPYSEESSANQELAEVTANQISEKDLQEECDGKRYVSESTRGEISENQFPPAKATRNFTY 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01852 631 PANTHER PROTEIN NRT1/ PTR FAMILY 5.6-LIKE 44 557 - -
Cca01g01852 631 MobiDBLite consensus disorder prediction 612 631 - -
Cca01g01852 631 Pfam POT family 166 513 IPR000109 GO:0016020|GO:0022857|GO:0055085
Cca01g01852 631 SUPERFAMILY MFS general substrate transporter 10 137 IPR036259 -
Cca01g01852 631 MobiDBLite consensus disorder prediction 600 631 - -
Cca01g01852 631 SUPERFAMILY MFS general substrate transporter 187 561 IPR036259 -
Cca01g01852 631 PANTHER OLIGOPEPTIDE TRANSPORTER-RELATED 44 557 IPR000109 GO:0016020|GO:0022857|GO:0055085
Cca01g01852 631 Gene3D MFS general substrate transporter like domains 4 569 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01852 Cca-Chr1 43322841 43335639 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01852 3 568 Organic Solute Cotransporters AT3G53960 24.132 7.27e-32 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01852 - K14638 ccaj:109818666 561.607