Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01847 ATGTCATCTCAGAATCAAACAGAGGAAGCATTAGTCACGAACCTCAACGAGACAGATCATGAAGTTGGCAACACAAGGGAAGAAGAGAGGGAGCAAGACCAATCCATGTTCAAATTCAAGAGCCTCCTATGGCATGGTGGTTCTGTTTGGGATGCATGGTTCAGCTGTGCTTCAAATCAAGTAGCTCAAGTGCTATTGACTCTGCCATACTCCTTTGCCCAACTTGGCATGGTATCAGGCATCTTGCTTCAGATCTTCTATGGCCTCATTGGAAGCTGGACTGCTTATCTAGTCAGTGTCCTCTACATAGAATACCGCACCAGGAAGGAAAAGGAAAATGTCAGCTTCAAGAACCATGTCATTCAGTGGTTCGAAGTTCTTGATGGGCTACTTGGTCCATATTGGAAAGCAGTGGGGCTAGCCTTCAACTGTACTTTCCTCCTCTTTGGATCTGTGATTCAGCTTATAGCATGTGCAAGTAACATCTATTACATAAACGACAAATTGTATAAACGGACATGGACTTATATTTTTGGAGCTTGCTGTGCCACCACTGTGTTCATACCATCCTTCCACAACTACCGAATCTGGTCATTTTTGGGTCTTGGAATGACCACTTACACGGCTTGGTACCTTGCTATTGCAGCCATCCTTCATGGCCAGGTAGAAAATGTGACACACTCGGGTCCAACAAAGCTAGTGTTATACTTTACTGGAGCCACTAACATACTATACACGTTTGGAGGACATGCTGTGACTGTAGAGATTATGCATGCCATGTGGCAGCCCCGAAAGTTCAAATACATCTACTTGCTAGCCACTTTGTACGTTTTCACACTAACGATTCCTTCCGCCGTAGCCGTTTACTGGGCTTTTGGTGATCAGCTTCTTGACCACTCCAACGCCTTCTCTCTCCTCCCCAGCTCTGGCTTCCGTGACGTTGCCGTTATCCTCATGCTCATTCACCAGTTCATAACGTTTGGGTTTGCGTGTACTCCGTTGTACTTCGTGTGGGAGAAGGTGATTGGAATGCACGACACAAAGAGCATTTGTTTGAGGGCACTTGCACGGTTGCCAGTGGTGATACCAATATGGTTTTTGGCTATAATATTTCCTTTCTTTGGGCCCATTAATTCAGCTGTTGGCTCTCTCCTCGTTAGCTTCACTGTCTACATCATCCCTGCCCTAGCCCATATGCTCACTTATAGAAAACCCTCTGCCAGACAGAATGCTGCTGAGAAGCCTCCTTTCTTCATGCCAAGTTGGACTGCAACGTATGTCCTCAATGCATTTATTGTGGTATGGGTTTTGGTGGTTGGATTTGGGCTTGGAGGATGGGCCAGCATGATCAACTTGTTAAAGCAAATTGATACATTTGGACTTTTTGCCGAATGCTACCAGTGTCCCATACCACCACCAGCGGGAGCACCACCACCTCTTGCCCATTCCTTACCTGATGGAGGAGGTGATCTAGTAGGATCATGGTCACCTCCAAATTTATTGAAGATTATTTAA 1515 0.4581 MSSQNQTEEALVTNLNETDHEVGNTREEEREQDQSMFKFKSLLWHGGSVWDAWFSCASNQVAQVLLTLPYSFAQLGMVSGILLQIFYGLIGSWTAYLVSVLYIEYRTRKEKENVSFKNHVIQWFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDKLYKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLAIAAILHGQVENVTHSGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWQPRKFKYIYLLATLYVFTLTIPSAVAVYWAFGDQLLDHSNAFSLLPSSGFRDVAVILMLIHQFITFGFACTPLYFVWEKVIGMHDTKSICLRALARLPVVIPIWFLAIIFPFFGPINSAVGSLLVSFTVYIIPALAHMLTYRKPSARQNAAEKPPFFMPSWTATYVLNAFIVVWVLVVGFGLGGWASMINLLKQIDTFGLFAECYQCPIPPPAGAPPPLAHSLPDGGGDLVGSWSPPNLLKII 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01847 504 MobiDBLite consensus disorder prediction 1 32 - -
Cca01g01847 504 Pfam Transmembrane amino acid transporter protein 45 438 IPR013057 -
Cca01g01847 504 MobiDBLite consensus disorder prediction 1 19 - -
Cca01g01847 504 PANTHER AUXIN TRANSPORTER-LIKE PROTEIN 4 2 471 - -
Cca01g01847 504 PANTHER OS05G0424000 PROTEIN-RELATED 2 471 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01847 Cca-Chr1 43148829 43152469 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01847 22 468 Organic Solute Cotransporters AT2G21050 79.065 0.0 749
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01847 K13946 - gmx:100809138 919.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01585 05 35094830 35099796 Cca01g01847 01 43148829 43152469 ECH
Cca01g01847 01 43148829 43152469 Cca01g01847 01 43148829 43152469 ECH