Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01846 ATGGTTGGTGACCTCCAAGACGCATCCTCTAGTGGCAATGGCATATGCACTAGCTCTATAGGATGCCTCTCAACCTTTGAAGGATACATGGATGGGGACGTTCCAGATGCATTTGTGGATGATAGGTTGATGAAAAAGGTGTTGTCTAGTGAAGGTGGAAAGGTGTTCTTAGTTGAGGAAAGATTGATGGTAAGGGACTCATGGATGGATTTTATGGGCTTAATGCTACTATGGACGTCTACGACAACTGTAGAGGATTTTTCGAGCTATGCAGCGATATTCATCCTTGCATTGGGGAAAAGCGGTCAAAAGCTTTCAGAAAAGTTCCTCGAGTATCAGTTAGaagagaaaattaaagagaaaacagaaagagaaCTGGAACATGGAAGCAGGCAAAACAACAGAGCGCAAGACCACGTTGGTAGAGGTCGTATAATTAATATATGGCTGCTATTCTTCGTTTCAATTGTTGGATATGTCATAACAGTTTGTATGGCCTTTACCATGAATGATGCAAGCTACCGTTACACCTTCAGAGTTGCGGCACTTCTTATGGGGGGGACTCATCTGTTTTTCCTCTTTGGTTGTGTGGGCTATAGGCGCAAAGAATTGAGGGCTGAAAGCTATCTACACATGATCTATAGAATCTGCAAAGCAGCTTCCGGGAAGCGGAAATCAAAGTATCCAGCAACAGCGAATTCATATCACTGGAAGAATTATAAGCAGAAGCACTTGTATAAGCATGGTAGAGGACTAAGGTTATCCCCCAGAGTTCCACGGTTATTCGGGTGGTTGGACAAAGCAGCTATAGTTGAAGTTGAAGAAGAGAATGGTAATCATGAAATGCAAGAAAAGAAAGGTAAGCTTTGCATGGTAAAGGAAGTGAGGGAAGTGAAGAGCCTTGTTCCAATGATCTACCTGTACATAGCCAGTTTTGGTTACGATCTACTCCTGGCCACCAAGAACACGTTCTTTGTTTCACAAGTAACCATCATGACATCTATTACAAAGAGTAATAGGGATATCTGGATTCTCTTTTTGATCTCGGACATCATGATTTATGTATCGGAATTCATCTGCTTTATTATTAGTTTTGCATTTGGACGCTTGAAAAAATTCAGAAGTATGGATGGTAGGTCCAAAAGAAAAGCAGGCACACTTACAAGGATTGGTTTTGGCATGCTTTGTGCGGTTACTTGCTGCCTCGTAGCATGTCTAATGGAGTCTCGTAGATTGTCCAAAGGAGGAATGACCACGACAATGACCTTAGTGCCACAATTTGTATTGGTAGGAACCACGGAGGGATTTGTTGAGGGGGGGTTAGGCAGTTTATTCCAGTGCCTCGTAGCAAAATCAATGTGGTCTTTCGAGGAATCGTTTACTGAAATAGTGATGGGTACTGGCAAACTCCTCACTATACCAGTTGTCTTATTTTCCAGTAGCTGGATCAAGGAAACTATCAACACTAGCCATTTGAACAGATACTATCTGTTGTTGGGAATACTGAACGCTGCGTTCCTTGTCGTTTTTGGATACTACTCCATCCGATATGCATACAAGGAAGCATGGCCGGAAGATGAATTGGAACATCCTCCTCATCAACCAGATTCTCATCAGGAAAATGATGATAATGAAGCACAACCGGAGGACCAAGATTTAGTTGAGTCCGTATTGGAAGAACCTCAGGAGGTTATAAAAAATAAAGCGGAGCAAACATTCAAAGATTTTCATCAACAAAACTCACAGGATTCTTATTCAAAAACTGATATTGAAGCTCAACAGATGGTGGACCAAGaattgggagaaccatag 1812 0.4106 MVGDLQDASSSGNGICTSSIGCLSTFEGYMDGDVPDAFVDDRLMKKVLSSEGGKVFLVEERLMVRDSWMDFMGLMLLWTSTTTVEDFSSYAAIFILALGKSGQKLSEKFLEYQLEEKIKEKTERELEHGSRQNNRAQDHVGRGRIINIWLLFFVSIVGYVITVCMAFTMNDASYRYTFRVAALLMGGTHLFFLFGCVGYRRKELRAESYLHMIYRICKAASGKRKSKYPATANSYHWKNYKQKHLYKHGRGLRLSPRVPRLFGWLDKAAIVEVEEENGNHEMQEKKGKLCMVKEVREVKSLVPMIYLYIASFGYDLLLATKNTFFVSQVTIMTSITKSNRDIWILFLISDIMIYVSEFICFIISFAFGRLKKFRSMDGRSKRKAGTLTRIGFGMLCAVTCCLVACLMESRRLSKGGMTTTMTLVPQFVLVGTTEGFVEGGLGSLFQCLVAKSMWSFEESFTEIVMGTGKLLTIPVVLFSSSWIKETINTSHLNRYYLLLGILNAAFLVVFGYYSIRYAYKEAWPEDELEHPPHQPDSHQENDDNEAQPEDQDLVESVLEEPQEVIKNKAEQTFKDFHQQNSQDSYSKTDIEAQQMVDQELGEP 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01846 603 PANTHER PROTEIN NRT1/ PTR FAMILY 5.6-LIKE 71 512 - -
Cca01g01846 603 Pfam POT family 89 473 IPR000109 GO:0016020|GO:0022857|GO:0055085
Cca01g01846 603 MobiDBLite consensus disorder prediction 574 593 - -
Cca01g01846 603 SUPERFAMILY MFS general substrate transporter 142 520 IPR036259 -
Cca01g01846 603 MobiDBLite consensus disorder prediction 527 603 - -
Cca01g01846 603 Gene3D MFS general substrate transporter like domains 56 524 IPR036259 -
Cca01g01846 603 MobiDBLite consensus disorder prediction 527 544 - -
Cca01g01846 603 MobiDBLite consensus disorder prediction 559 573 - -
Cca01g01846 603 PANTHER OLIGOPEPTIDE TRANSPORTER-RELATED 71 512 IPR000109 GO:0016020|GO:0022857|GO:0055085
Cca01g01846 603 Coils Coil 119 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01846 Cca-Chr1 43112864 43121811 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01846 85 525 Organic Solute Cotransporters AT3G53960 24.516 8.90e-25 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01846 - K14638 ccaj:109808483 1061.98