Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01654 ATGGAGccttcactcctactttcttcaccttcatcctccacccctttacccttcTTCATCTCAAACAACCTCCCTTTCCATCCAAAACCCAATCTTTCCGTCAAATTCAATTGCTCCCTCCAAAAGTCCCAATTTTGGGGCAGAAACTTGAGTTGGGTCTCGTCACAATCGCACGAAAGAGCAAAATCGGGTGTGCTGAGGCCCACGATAACGGCAGCGGTGAAGAGGAGGAAGGAGCTTCCCTTCGACAACGTGATTCAGAGGGACAAGAAGCTCAAATTCGTCCTCAAGGTAAGGAAGATTCTTGTGACTCAACCAGATAGGATTATGTCGCTTAAGCAACTTGGTAAGTTCAAAAGGGATTTAGGTCTTGATAAAAAGAGGAGGCTTATTGCCATATTGAAGAAATTCCCTGCAGTGTTTGAGATTATGGAAGAAGGGGTTTACTCTCTCAAATTCAAAATGACCAATGAAGCTGAAAGGCTCTATTTTGAGGAATTGAGGGTTAGGAATGAAATGGAGGAGTTGGTTGTTGTGAAGCTTAGGAAGTTGTTGATGATGTCACTTGAAAAACGGATTTTGTTGGAGAAGATTGCACATCTCAAGACTGATTTGGGTCTGCCACTAGAATTTCGTGACACAATTTGTCATAGGTACCCACAGTTCTTCAAAGTGGTGGCAACTCAGCGTGGCCCTGCTTTGGAATTGACTCATTGGGATCCTGAGCTAGCCGTGTCGGCTGCTGAGTTGTCGGCGGAGGAGAATCGGATTAGGGAAATGGAGGAGCAGAATTTGATCATAGACAGGCCTCCTAGGTTCAATAGGGTGAAGCTTCCTAAGGGGCTTAATCTTTCCAAGGGTGAGATGAGGAAGATTATGCAATTCAGGGATTTGCCTTATATTTCGCCTTACTCGGATTTCTCAGGACTCAGGCCAGGGTCTAGGGAGAAGGAGAAGCATGCTTGTGGAGTTGTTCATGAGATCTTGAGTCTCACACTTGAGAAGCGAACGCTTGTGGATCATCTCACACATTTTAGAGAGGAGTTTAGATTCTCTCAGCAGCTGAGGGGGATGTTGATAAGGCATCCTGATATGTTTTATGTCTCCCTCAAAGGAGATAGGGATTCTGTGTTTTTGAGGGAAGGTTATCGAGATTCTCAGTTGGTGGAGAAGGACAGGTTGTTGCTTATAAAGGAAAAGCTTCGTTCCCTTGTTAATGTTCCTCGGTTTCGCGGGGGAGCTGGTCGCAGGGTAGTTGAAGATAGCATGAGAGAAAGTGATAGCAGAGAAGATGAAAGTGGTGGAGAGGAAGAAGATTGGTCAGAAGTTGATAACTTAatgagtgatgctgggtttgatgactctggtgatgatgatgatgatgttaatgactggagtgatgaagatgatgacgatttgccgccggattttgatgaggatgctgaAATGTTGGAGATTGGACAAGGAAAGACTGTTAAACAAGTTGAAGAGTCAAGACAGAAGGATGAAAAGGTTCTTGTTCCTGTATTTCCTGATGGCCGTCCAAGAGAACAATGTGTTTCGGGTTTATCGGGTTCAGATAACAACAATGGAGGAGAGAGGGATGGCGAAGCCACTGCAGTAGGGGACAACGCGGGAGTCGTCGCAGTTGGAGACGATGATTTTGTCCCGCGTGATGACAGTGATGACCGCGGTGGATCCGACAGCGTCGTAGTGAGGAGTACAAAACTCGCAGCAGCAAGCGTAGGTGTGTTCGTTCTGGCTGCAATGATGAACCTCGTCGTCCATGCAAGCGAAACCGTTCCCCTATGA 1812 0.4216 MEPSLLLSSPSSSTPLPFFISNNLPFHPKPNLSVKFNCSLQKSQFWGRNLSWVSSQSHERAKSGVLRPTITAAVKRRKELPFDNVIQRDKKLKFVLKVRKILVTQPDRIMSLKQLGKFKRDLGLDKKRRLIAILKKFPAVFEIMEEGVYSLKFKMTNEAERLYFEELRVRNEMEELVVVKLRKLLMMSLEKRILLEKIAHLKTDLGLPLEFRDTICHRYPQFFKVVATQRGPALELTHWDPELAVSAAELSAEENRIREMEEQNLIIDRPPRFNRVKLPKGLNLSKGEMRKIMQFRDLPYISPYSDFSGLRPGSREKEKHACGVVHEILSLTLEKRTLVDHLTHFREEFRFSQQLRGMLIRHPDMFYVSLKGDRDSVFLREGYRDSQLVEKDRLLLIKEKLRSLVNVPRFRGGAGRRVVEDSMRESDSREDESGGEEEDWSEVDNLMSDAGFDDSGDDDDDVNDWSDEDDDDLPPDFDEDAEMLEIGQGKTVKQVEESRQKDEKVLVPVFPDGRPREQCVSGLSGSDNNNGGERDGEATAVGDNAGVVAVGDDDFVPRDDSDDRGGSDSVVVRSTKLAAASVGVFVLAAMMNLVVHASETVPL 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01654 603 MobiDBLite consensus disorder prediction 553 568 - -
Cca01g01654 603 MobiDBLite consensus disorder prediction 511 568 - -
Cca01g01654 603 Pfam Plant organelle RNA recognition domain 79 406 IPR021099 GO:0003723
Cca01g01654 603 MobiDBLite consensus disorder prediction 416 479 - -
Cca01g01654 603 PANTHER PROTEIN WHAT'S THIS FACTOR 1 HOMOLOG, CHLOROPLASTIC 12 467 IPR040293 GO:0000373|GO:0003723
Cca01g01654 603 Coils Coil 243 263 - -
Cca01g01654 603 PANTHER PROTEIN WHAT'S THIS FACTOR 1 HOMOLOG, CHLOROPLASTIC 12 467 IPR045040 GO:0003723
Cca01g01654 603 MobiDBLite consensus disorder prediction 451 479 - -
Cca01g01654 603 MobiDBLite consensus disorder prediction 416 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01654 Cca-Chr1 38217047 38219865 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01654 - - gmx:100810556 800.816