Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01649 ATGACACTTCTTCATTCCTTGCCCACCATGACCAACTTTTCCTCCAACCAGATTCGCTTTCTCCTCAGCTCCCTCAACGAAGTCAACTTTGACTCCGTTTTCCATCAACTCTCTCAGTTCACGGAATTTGGAACTACCGGATGCATTTTGCTGCTTCGAACTTGCTTGGATCACTATGGTTATCTCAGAAGAGATACGAAAGACATGCAGTATGAGCCAATTCTTGGGGCAGTCATTAAGTACCTGTTGGACAGACCAAACTTTAGTACGGTGTTTTCTGAGTCAATGAAGAATGTAGAAATTAATGAAAGCTTTTTAGAAAGTTTTTGTAATGGATTGCAGTTATCTTTATTGGAAAAAATTGTCACCAGTCTTGCTTTATCTGATTCTGAGAATACTGATGTCAGGCTGTGTGGCAAAAATTTTTGCATGGCTCGGATTGAGGAATTGTGTGTCAACCCTGGTTCTTTGAGTTGCCATGATCAAATTCACAATATTATCATCTTCCTTAAGCAGTCTGAGGGTCTTTCCAAGCATGTGGATTCCTTTATGCAGATATTATCACTTGTGCAGTTCAAAGACACGCCACCTTTTGTCTTGAATCCATTGCTTCCTGATGAGATGCATGAGGCTGATTTTTTAAGGAATATGGAGTTTTTCCACGAGTGTGGGGAAAATGATTTTGATGCTATTTTGGCAGACATACAGAGGGAAATGAGCATGGGTGATATCGTGAAGGAACTAGGCTATGGATGTACGGTTGATGTCTCGCAGTGCAAGGAAATATTTTCGCTCTTCTCACCTTTAACTGAAAATACGCTCTCTAAATTACTTGGTGCTATTGCTTGTACCCATACTGGGCTGGAGGACGACCAAAACACATACTTAACTTTTCGTGCAGCCCATGGATACAATGTGTCTGAGTTGCCGCCGCTGAACTCTTGGAATATTGATGTCTTGATTGATACAGTCAAGCATCTCGCACCTCAAACCAATTGGGTACGTGTTATTGAAAGTCTTGACCATGAAGGGTTTTTCCTTCCTAGTGAAGAAGCGTTCTCTTTTCTCATGTCTGTGTATAAGCTTGCCTGTAAGCAGGAACCATTTCCTCTCCATGCCATCTGTGGGTCTGTCTGGAAGAATACTGAGGGTCAGTTGTCATTCCTTAAATATGCTGTATCAGCACCACCAGAAATGTTTACCTTTGCACACTCGGGAAGATTGCTGGCATATGTTGATGCAATTAATGGTCACAAGCTTCAAAATGGACATGCAAATCATGCATGGCTGTGTCTTGATCTTTTAGATGTCCTCTGCCAGCTAGCTGAGAAGGGTCACGCCAGTATTGTTCGATCAATCCTTGAGTATCCCCTTAAACACTGTCCGGAAGTCTTGCTTCTTGGGATGGCACATGTTAATACTGCCTACAACCTCCTGCTGCGGGAAGTATCTTTGATTGTTTTTCCCATGATTGTCAAAAGTGCTGTAGGCAGTGGGATGATTCTACACCTTTGGCATGTTAATCCCAGTCTGGTCCTTAGAGGGTTTATTGATTCTCAAAACAATGATGCAGACAGCATTATAAGAATTGTGGACATCTGCCAGGAGCTTAAGATTCTATCATCTGTGGTGGAAACTATCCCCTCTTATTATAGTATAAGGTTAGCAGCTGTTGCATCAAGAAAAAAATTCCTTGACCTTGAGAAGTGGTTGAGTAGCAACTTAACTACGTTCAAGGAAGTCTTTTTTGAGGAGTGCCTCAAGTTCTTAAAGGATGCCCATTTTGGTGGATCACAGAACCTTTCTGGCAAATCTTTTCATCAGTCTGGTGCTGTTCTTAGTCTATACAGCGAGACAACTGCTACCGTCTTGAAGGTTCTTAAATCCCATACTGACTCAGTTGCCTCTGGACAACTTTCTGAAGAGTTGGAAAGGCTGCATATATCTATTATAGATTCGAATCCGAGGCTTCAAAATGGTGGGACTGCTGATTCATCTACTTCTGATGGATATTCAGAAGACGTTGAAGCAGAAGCAAACACCTTATTCCATCAAATGTTTTCTGATCAGTTAACCATTAATGCAATGGTCCAAATGCTTGCTCGATTCAAGGAATCATCATTGACCAGGGAGAATTCAATTTTTGAATGCATGATTGCAAACTTGTATGAGGAGTATAGATTTTTCCCAAAGTATCCTGAAAGGCAACTTAAAATTGCTGCTCTTCTCTTTGATGTTTTTGTTTGGAAGTCTGGCATTGGAGCAGGTCTTGCCAGAATTTCCTCTGGTCATTCAGATGTTGATGGGGCGAGTCATGCTTCTGTCATTAGTAACCATCATTCTGCACAGGCTACATTAGGGCATGTAGAGCTGAGCGGCCCTAGCGTCGTACAACCTGGGCAGCAACATTTGTCACTGCAGCTTCAACAGAGACGTGAAAATCCCTTGGATGATCGTCACAAAACTTCTGTTGGTTCATCTACAGATGTGAAACCACTGTTATCTTCTCTGGGGCAATCATCAGTACTAACACCTGCTGATGCTTCTAGTACTAATAAGTTACATAGCACAGTCAGCTCCTCGTCAATGCTGTCTTCTGCTTCACCTGGTTTTGTTCGTCCTTCCCGTGGAGCTACTTCTACCAGGTTTGGATCTGCCTTAAACATTGAAACATTGGTTGCTGCTGCTGAGAAAAGAGAAATTCCTATTGAGGCTCCAGGGTCAGAGGTTCAGGACAAGATATTATTTATAATTAATAATGTTTCTGCTGCTAATATTGAAGCTAAAGCAAAAGAGTTCACTGAAATTTTGAAAGAGCAGTACTATCCTTGGTTTGCTCAGTATATGGTTATGAAAAGAGCAAGCATTGAGCCAAATTTCCATGACTTGTACCTGAAATTCCTGGATAAGGTTAATTCAAAGGCTTTGAACAAAGAGATCGTCCAGGCAACATATGAAAATTGCAAGGTTCTTTTAGGATCAGAGCTCATAAAATCAAGTTCAGAGGAACGTTCTTTGCTTAAAAACTTGGGGAGTTGGCTTGGGAAGTTAACAATTGGCCGGAATCAGGTTTTGAGGGCTCGTGAAATAGACCCAAAGTCTTTGATTATGGAGGCATATGAGAAGGGGCTAATGATTGCTGTTATTCCATTTACTTCAAAGGTCCTTGAACCATGCCATAACAGTCTTGCTTATCAACCTCCTAATCCTTGGACTATGGGCATTTTAGGATTGCTTGCTGAGATTTATTCAATGCCAAACTTGAAAATGAACCTCAAGTTTGACATAGAGGTTTTATTCAAAAATCTTCTTGTTGATATGAAGGATGTCACACCAACTTCTCTCCTGAAGGATAGAAAAAGAGAAATTGAAGGAAATCCTGATTTCTCTAATAAAGACGTTGGGGCATCTCAAGCACAAATGATTACTGATATAAAATCTGGTCTTGTACCTCCAGTAAATCAAGTGGAATTACCTCTTGAAGTCACCAATCCATCTAATACAGGGCCTCATCCACATCTACTGTCTCAGTATGCTGGTCCTCTTCATATGTCATCGGCAGCATTGATGGAAGATGAAAAGGTTACACCTCTGGGACTGTCTGATCAACTTCCCTCTGCTCAAGGACTGTTACAAGCAACTCCATCCCCAGCACCTTTTTCTATTAGCCAGCTTCCAACACAGATACCTAATATCGGGACTCATGTTATTATCAATCAAAAACTCAGTGGTTTTGGGTTGCAAATGCATTTTCAGAGAGCGGTACCCATTGCAATGGACAGGGCTATCAAAGAGATTGTGTCTAGTATTGTGCAGCGTAGTGTTTCCATAGCAACTCAAACAACCAAAGAGCTTGTTCTAAAGGATTATGCTATGGAATCTGATGAGACTCGTATATTAAATGCGGCACACTTGATGGTTGCTAGTCTAGCTGGGAGTTTGGCTCATGTTACCTGCAAAGAACCATTACGGGCATCAATATCTGGTCAACTGAGGACTTCTCTTCAGAACTTAAATATATCTAATGAAATTTTGGAACAAGCTGTGCAACTTGTCACCAATGATAATCTTGATCTAGGCTGTGCCGTTATCGAACAGGCTGCTACTGATAAGGCAATAAACACCATTGATACAGAGATTGGTCAACAACTCTCTTTGAGAAGGAAGCATCGAGAAGGTATGGGTTCTACATTTTTTGATGCCAATTTGTATCCACAAGGTTCAATGGGTGGTGTTCCAGAGCCTCTTCGCCCCAAGCCTGGTCAGTTGTCCCTCTCACAACAGCGTGTCTATGAG 4296 0.4155 MTLLHSLPTMTNFSSNQIRFLLSSLNEVNFDSVFHQLSQFTEFGTTGCILLLRTCLDHYGYLRRDTKDMQYEPILGAVIKYLLDRPNFSTVFSESMKNVEINESFLESFCNGLQLSLLEKIVTSLALSDSENTDVRLCGKNFCMARIEELCVNPGSLSCHDQIHNIIIFLKQSEGLSKHVDSFMQILSLVQFKDTPPFVLNPLLPDEMHEADFLRNMEFFHECGENDFDAILADIQREMSMGDIVKELGYGCTVDVSQCKEIFSLFSPLTENTLSKLLGAIACTHTGLEDDQNTYLTFRAAHGYNVSELPPLNSWNIDVLIDTVKHLAPQTNWVRVIESLDHEGFFLPSEEAFSFLMSVYKLACKQEPFPLHAICGSVWKNTEGQLSFLKYAVSAPPEMFTFAHSGRLLAYVDAINGHKLQNGHANHAWLCLDLLDVLCQLAEKGHASIVRSILEYPLKHCPEVLLLGMAHVNTAYNLLLREVSLIVFPMIVKSAVGSGMILHLWHVNPSLVLRGFIDSQNNDADSIIRIVDICQELKILSSVVETIPSYYSIRLAAVASRKKFLDLEKWLSSNLTTFKEVFFEECLKFLKDAHFGGSQNLSGKSFHQSGAVLSLYSETTATVLKVLKSHTDSVASGQLSEELERLHISIIDSNPRLQNGGTADSSTSDGYSEDVEAEANTLFHQMFSDQLTINAMVQMLARFKESSLTRENSIFECMIANLYEEYRFFPKYPERQLKIAALLFDVFVWKSGIGAGLARISSGHSDVDGASHASVISNHHSAQATLGHVELSGPSVVQPGQQHLSLQLQQRRENPLDDRHKTSVGSSTDVKPLLSSLGQSSVLTPADASSTNKLHSTVSSSSMLSSASPGFVRPSRGATSTRFGSALNIETLVAAAEKREIPIEAPGSEVQDKILFIINNVSAANIEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNKEIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIMEAYEKGLMIAVIPFTSKVLEPCHNSLAYQPPNPWTMGILGLLAEIYSMPNLKMNLKFDIEVLFKNLLVDMKDVTPTSLLKDRKREIEGNPDFSNKDVGASQAQMITDIKSGLVPPVNQVELPLEVTNPSNTGPHPHLLSQYAGPLHMSSAALMEDEKVTPLGLSDQLPSAQGLLQATPSPAPFSISQLPTQIPNIGTHVIINQKLSGFGLQMHFQRAVPIAMDRAIKEIVSSIVQRSVSIATQTTKELVLKDYAMESDETRILNAAHLMVASLAGSLAHVTCKEPLRASISGQLRTSLQNLNISNEILEQAVQLVTNDNLDLGCAVIEQAATDKAINTIDTEIGQQLSLRRKHREGMGSTFFDANLYPQGSMGGVPEPLRPKPGQLSLSQQRVYE 1432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01649 1432 Pfam CCR4-NOT transcription complex subunit 1 TTP binding domain 656 744 IPR032193 -
Cca01g01649 1432 Gene3D - 661 751 IPR038535 -
Cca01g01649 1432 MobiDBLite consensus disorder prediction 810 879 - -
Cca01g01649 1432 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX 755 1432 IPR040398 GO:0017148|GO:0030015
Cca01g01649 1432 PANTHER BNACNNG58980D PROTEIN 755 1432 - -
Cca01g01649 1432 PANTHER BNACNNG58980D PROTEIN 16 747 - -
Cca01g01649 1432 Pfam CCR4-Not complex, Not1 subunit, domain of unknown function DUF3819 1249 1391 IPR024557 -
Cca01g01649 1432 Pfam CCR4-NOT transcription complex subunit 1 CAF1-binding domain 903 1123 IPR032191 -
Cca01g01649 1432 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX 16 747 IPR040398 GO:0017148|GO:0030015
Cca01g01649 1432 Gene3D - 875 1125 - -
Cca01g01649 1432 MobiDBLite consensus disorder prediction 826 879 - -
Cca01g01649 1432 Coils Coil 1335 1355 - -
Cca01g01649 1432 MobiDBLite consensus disorder prediction 1409 1432 - -
Cca01g01649 1432 Pfam CCR4-NOT transcription complex subunit 1 HEAT repeat 486 628 IPR032194 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01649 Cca-Chr1 38149997 38166591 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01649 K12604 - gmx:100803794 2492.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g01649 01 38149997 38166591 Cca01g01649 01 38149997 38166591 ECH