Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01644 ATGGGGAAGATCCCTCCTTCATTCCGCTCGGCAATTGCGAACCCCAACCTCCGAAATTCATCTTCTCTCTTCCGCCCCCAAACCCCTTCTCCCTCCAAACACCCCCACTCCCCAAACAAACACCGTCCCCAGAAACCCCCCAAACAAAACCAACCCCCTCCCCCTCTATTCAAATCCCCAAACCTCCAAGACGCCAAAGCCCTCTTCGATTCCATCGCCAACTCCTCCTCCGACCCCCGCTTCCCCAACTCCCTCCTCCACTCCTACGCCGCCGTCGCCGCCTCCCCCTCCGACTCCCTCGCCTTCCTCCGCCACATCACCCAAACCCTCCCCTCCTTCTCCCCCGACCGCTCCACCTTCCACATCCTCCTCTCCCACCAATCCCACTCCCAATCCCTCTCCCCAATCCACCAAACCCTAAACCTCATGCTCTCCTCCGGCCTCGCCCCCGACGCCGCCACCGCCGACATCGCCGTCCGCGCCCTCTGCTCCGCCTCCCGCCTCGACCACGCCGTCCAATTGCTCAAGGAATTCGCCTCCAAGCACTGCCGCCCTGACACCTTCACCTTCAACCACCTCCTCAAGCACCTCTGCAAGTCCCGCCCCCTCTCCTCCGTCTACGCCTTCATCGACGAGATGCGCCGCGACTTCACCCTCAAGCCCGACCTCGTCACCTACACCATCCTCATCGACAACGTCTGCAACTCCAAGAACCTCCGAGAGGCCACGCGCCTCGTCGCCGTCCTCCACCGCGAGGGCTTCAAGCCCGATTGCTTCCTCTACAACACCATCATGAAAGGCTACTGCGCCCTCAGCAGGGGGAGCGAGGCCATCGAGGTCTACAACAAGATGAAGGAGCAAGGCGTGGAACCCGACCTCGTCACCTACAACACCTTGATCTTCGGCCTGTCCAAGTCCGGCAGGGTTTCCGAGGCCAAGAAGCTTCTGCGCGTCATGGCGGAGAAGGGCTTCTTCCCCGATGAGGTCACCTACACTTCGCTCATGAATGGCATGTGCAGGAAGGGCGATGCGGCGGCGGCGCTCGCGCTGCTGGCGGAGATGGAGGCGAAGGGGTGTAGTCCCAATGCGTGCACTTACAACACGCTGCTGCACGGCTTGTGCAAGGCGAGGCTGTTGGAGAAGGCCGTGGAGTTCTATGGGGTCATCAAGGAGGGTGGGTTGAAGCTCGACACGGCTGCGTATGCCACGTTTGTTAGGGCGCTCTGTAGGGATGGGAGAGTTGCTGAGGCCTATGAGGTGTTCGATTATGCGGTTGAGAGCAAGAGCTTGACGGATGTGGCTGCTTACTCGACGTTGGAGAGCACGCTTAAGTGGCTCAGGAAAGCCAAAGAACAAGGCCTTGCTGTTTGA 1371 0.6061 MGKIPPSFRSAIANPNLRNSSSLFRPQTPSPSKHPHSPNKHRPQKPPKQNQPPPPLFKSPNLQDAKALFDSIANSSSDPRFPNSLLHSYAAVAASPSDSLAFLRHITQTLPSFSPDRSTFHILLSHQSHSQSLSPIHQTLNLMLSSGLAPDAATADIAVRALCSASRLDHAVQLLKEFASKHCRPDTFTFNHLLKHLCKSRPLSSVYAFIDEMRRDFTLKPDLVTYTILIDNVCNSKNLREATRLVAVLHREGFKPDCFLYNTIMKGYCALSRGSEAIEVYNKMKEQGVEPDLVTYNTLIFGLSKSGRVSEAKKLLRVMAEKGFFPDEVTYTSLMNGMCRKGDAAAALALLAEMEAKGCSPNACTYNTLLHGLCKARLLEKAVEFYGVIKEGGLKLDTAAYATFVRALCRDGRVAEAYEVFDYAVESKSLTDVAAYSTLESTLKWLRKAKEQGLAV 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01644 456 Gene3D Tetratricopeptide repeat domain 203 305 IPR011990 GO:0005515
Cca01g01644 456 Gene3D Tetratricopeptide repeat domain 56 202 IPR011990 GO:0005515
Cca01g01644 456 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 362 396 IPR002885 -
Cca01g01644 456 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 1 455 - -
Cca01g01644 456 MobiDBLite consensus disorder prediction 45 59 - -
Cca01g01644 456 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 151 185 IPR002885 -
Cca01g01644 456 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 257 291 IPR002885 -
Cca01g01644 456 Pfam Pentacotripeptide-repeat region of PRORP 275 426 IPR033443 -
Cca01g01644 456 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 292 326 IPR002885 -
Cca01g01644 456 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 1 455 - -
Cca01g01644 456 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 222 256 IPR002885 -
Cca01g01644 456 SUPERFAMILY HCP-like 260 429 - -
Cca01g01644 456 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 397 431 IPR002885 -
Cca01g01644 456 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 327 361 IPR002885 -
Cca01g01644 456 Gene3D Tetratricopeptide repeat domain 309 455 IPR011990 GO:0005515
Cca01g01644 456 MobiDBLite consensus disorder prediction 12 30 - -
Cca01g01644 456 Pfam PPR repeat family 185 235 IPR002885 -
Cca01g01644 456 TIGRFAM PPR: pentatricopeptide repeat domain 364 397 IPR002885 -
Cca01g01644 456 TIGRFAM PPR: pentatricopeptide repeat domain 400 428 IPR002885 -
Cca01g01644 456 TIGRFAM PPR: pentatricopeptide repeat domain 329 363 IPR002885 -
Cca01g01644 456 TIGRFAM PPR: pentatricopeptide repeat domain 260 292 IPR002885 -
Cca01g01644 456 TIGRFAM PPR: pentatricopeptide repeat domain 158 187 IPR002885 -
Cca01g01644 456 TIGRFAM PPR: pentatricopeptide repeat domain 294 328 IPR002885 -
Cca01g01644 456 TIGRFAM PPR: pentatricopeptide repeat domain 224 258 IPR002885 -
Cca01g01644 456 MobiDBLite consensus disorder prediction 1 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01644 Cca-Chr1 37938957 37942364 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01644 239 453 Glycosyltransferase AT1G05670 30.137 2.33e-23 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01644 - - gmx:100782321 723.776