Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01642 ATGTTCCTTTCACTCAGATACTCCTTCACGTTCCTCTTCACTCTCGTCCTCATATCATTATCACCTTCACGCATTGCTTCAACAACACCGCATGATCCCACATTCACACCACAAAGCACCAAAATAGCCATCACAAACCACATTGTTCAAGGTTTCACCAATGCTGGCAGAGGCTCCAAAATCTCAGGCATATCGCAATTCAAACGATACCTCTCTCGTTTCGGGTACCTACGAAACAACAACAACACCAGTTTCGATGATGAATTTGATGCCAAGTTGGAATCGGCTATCGTTAGATACCAACGAAACCTTGGACTCCAAGTAACCGGGAAGCTCGATTCCAACACGGTTTCTCAAATGATCACACCGAGGTGCGGTGATCCAGAcacaaacacgacaccccacaatcacaatcaccatcatcatcatcaaaatcacaatcacGTGACAAAGAATTTCGTGTTTTTCCCGGGAAAACCACGTTGGTCACGTCCCATGCCAATGACACTCTCCTATGCCTTCTCACGTGAGAACATGATCCACAGTTTGAGCATAAAGGAGATAAGAGAGGCTTTCCAACGTGCGTTCCTAAGGTGGGCTTCGGTTATTCCGGTTAGTTTCGTTGAAGTGGATGACTTTGACCTTGCGGAGATAAAAATAGGGTTTTACAATGGGGAGCATGGCGATGGTGAGCCTTTTGATGGGGTTCTTGGAGTGTTGGCACACTCCTTCTCGCCCGAGATCGGGCGGCTCCACCTTGACGCGGCCGAGACCTGGGCGGTGGACTTCCGGGCGACCGCGTCAGAGGTGGCTGTGGACTTGGAGTCCGTGGCCACACATGAGATTGGACACTTGTTGGGGTTGTCTCATAGTTCGGTGAAGGAGGCTGTTATGTATCCAAGTTTGAGGCCTAGAGGTAAGAGGGCTGATTTGAACATTGATGACATAAAAGGGGTGCAATCTCTATATGGCTCAAACCCTAATTTCAGATCCGAGTGGTCACTAGAGTCTGATATGTCAGCAAATCAAGGTGAACGACATTGGCCTTGCCACCGCTTGCCCCAACCTAGGATGCCTACATATAATTGGTGCCTCAAAGATGGTTTCCTCAATACTTCCGAGAATTTCCCAACGATGCAGGACCTCGATCTACAATGCTGCAGTGACACTGTTCACATGTTGGAACCTTCAACTCGATTTGCAGTGCAGTGTTGTAGTGATACCATTTGCATGTCGGAACCTTCAACCTTGATCTACAATGCTACAATAAATGGTTTCTTCATGTTTCGTGCTTCCCTTCAAATCTATAGTGAATGCTTTTTGATTTGTCGATGA 1335 0.4524 MFLSLRYSFTFLFTLVLISLSPSRIASTTPHDPTFTPQSTKIAITNHIVQGFTNAGRGSKISGISQFKRYLSRFGYLRNNNNTSFDDEFDAKLESAIVRYQRNLGLQVTGKLDSNTVSQMITPRCGDPDTNTTPHNHNHHHHHQNHNHVTKNFVFFPGKPRWSRPMPMTLSYAFSRENMIHSLSIKEIREAFQRAFLRWASVIPVSFVEVDDFDLAEIKIGFYNGEHGDGEPFDGVLGVLAHSFSPEIGRLHLDAAETWAVDFRATASEVAVDLESVATHEIGHLLGLSHSSVKEAVMYPSLRPRGKRADLNIDDIKGVQSLYGSNPNFRSEWSLESDMSANQGERHWPCHRLPQPRMPTYNWCLKDGFLNTSENFPTMQDLDLQCCSDTVHMLEPSTRFAVQCCSDTICMSEPSTLIYNATINGFFMFRASLQIYSECFLICR 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01642 444 PRINTS Matrixin signature 192 207 IPR021190 GO:0004222|GO:0006508|GO:0008270
Cca01g01642 444 PRINTS Matrixin signature 120 133 IPR021190 GO:0004222|GO:0006508|GO:0008270
Cca01g01642 444 PRINTS Matrixin signature 277 302 IPR021190 GO:0004222|GO:0006508|GO:0008270
Cca01g01642 444 PRINTS Matrixin signature 311 324 IPR021190 GO:0004222|GO:0006508|GO:0008270
Cca01g01642 444 PRINTS Matrixin signature 216 244 IPR021190 GO:0004222|GO:0006508|GO:0008270
Cca01g01642 444 PANTHER MATRIX METALLOPROTEINASE 33 346 - -
Cca01g01642 444 Pfam Putative peptidoglycan binding domain 64 120 IPR002477 -
Cca01g01642 444 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 154 327 - -
Cca01g01642 444 CDD ZnMc_MMP 161 324 IPR033739 GO:0008237|GO:0008270
Cca01g01642 444 SUPERFAMILY PGBD-like 57 130 IPR036365 -
Cca01g01642 444 Gene3D Collagenase (Catalytic Domain) 53 330 IPR024079 GO:0008237
Cca01g01642 444 PANTHER METALLOENDOPROTEINASE 4-MMP 33 346 - -
Cca01g01642 444 SMART col_5 158 325 IPR006026 GO:0006508|GO:0008237|GO:0008270
Cca01g01642 444 Pfam Matrixin 169 324 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01642 Cca-Chr1 37812874 37817000 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01642 - K07999 gmx:100781237 544.273