Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01621 ATGCACTTTGTTTCTATCCCCTACACCCGCCCCCATCGCAAAATCTGTCTTTCCACAGCTTCTTCAATGGAGGCAGCATCATCAACAAGAACCCACATAGCCCTAGTCTCTGTCCCCGCTTTCAGCCACCAAGTCTCGATCCTCGAGTTCGCCAAGCGCCTCCTTCACCTCCACAACGACGACACCTTCCATGTCACATGCATCATTCCCACTCTCTCTTCACTCTCCACTCCCTCCAAGCCCTTCTTCCACACCCTCCCTCCCAACATTCACTGCATTTTCCTCCCCTCAGTGCACTTCGACGACCTCAAGAGCAATGGCGTGTCCTTGGAAATCCAACTTCAGCTCTCAGTTTCCCGAGCCATGCCCTCCGTTAGGGACACTTTAAGGTCACTCCTTGGTAGCGCCAACGTGGTTGCCCTAATTGCCGATGCCATGGTTCCCGAGGCACTGGAGTTTGGGAAGGAACTCAACATCTTGTCCTACATATACTTCCCTTGTTCCACCATGTTGCTATCTCTGTGCCTTCATTCTCCTACCTTGCATGAAGAGGTTTCATGTGAGTATAGAGACCACCCCCATTTGATACAGATTCCGGGTTGCATCTCCATTTATGGCAAAGATCTCCCAAACAGTGTTCAAGATCGGTCCAGTTTGGATTACAAGCTGTTCCTTAAACGTTGCCAAAGGTACCGTGGAGTTCATGATGGTATATTGGTGAATAGCTTCGTGGAAATGGAGGAAGAGGCAACAAAAGCAATTACCCAAAATGGTATTAGTAATGGTGATGATGTCGGTGACGCTCATAGTAACTACCCTCCTATTTTTCAAATTGGACCCATCATACAAACTGGGCCTAGTGATCCAAAAATTGGTTGTGAGTGTTTATTGTGGTTGGATAAGCAACCACGTAACTCGGTTCTTTATGTGTCCTTTGGAAGTGGTGGCACACTCTCACAAGAGCAGATTAATGAGCTTGCTTTGGGGTTGGAATTGAGCAAGCACAAGTTTCTGTGGGTTAATTTGAGAGCACCAAATGACAAAGCAAGTGCTACTTATTTTGTGGGTGATGGTTTGGTGGATGACCCTTTGAGTTTTTTGCCTTTGGGGTTCTTGGAGAGAACCAAAGGGCAGGGTTTGGTTATCTCTGGCTGGGCCCCACAAGTTGAAGTCCTAGGTCACGAGTCAGTGGGTGGATTTTTGACTCACTGTGGTTGGAACTCGGTTTTGGAGAGTGTGGTGCATGGAGTGCCAATGATGGCTTGGCCTTTGTTTGCTGAACAAAGAACCAATGCTGCTTTGGTGACTGATGGGTTGAAAGTTGCTGTGAGACCAAAGGGTGACACTAGTGGCAAGAGTGTGGTGGTGAAGGAGGAAGTTGCTGAACTCGTGAAGAGACTCATGGAGGGGTTGGAGGGTGGAGAAATTCGGAGGAGGATGAAGGATCTGCAGAAGTTTGCTGCTTGTGCTGTGATGGAAGATGGGTCTTCCACAAGGACATTATCAAAGTTGGCACAAAAGTGGAAAAGTTTGGGAAGATTTTACCAAAAGAATATTGAATGTGGTAATTAA 1572 0.4746 MHFVSIPYTRPHRKICLSTASSMEAASSTRTHIALVSVPAFSHQVSILEFAKRLLHLHNDDTFHVTCIIPTLSSLSTPSKPFFHTLPPNIHCIFLPSVHFDDLKSNGVSLEIQLQLSVSRAMPSVRDTLRSLLGSANVVALIADAMVPEALEFGKELNILSYIYFPCSTMLLSLCLHSPTLHEEVSCEYRDHPHLIQIPGCISIYGKDLPNSVQDRSSLDYKLFLKRCQRYRGVHDGILVNSFVEMEEEATKAITQNGISNGDDVGDAHSNYPPIFQIGPIIQTGPSDPKIGCECLLWLDKQPRNSVLYVSFGSGGTLSQEQINELALGLELSKHKFLWVNLRAPNDKASATYFVGDGLVDDPLSFLPLGFLERTKGQGLVISGWAPQVEVLGHESVGGFLTHCGWNSVLESVVHGVPMMAWPLFAEQRTNAALVTDGLKVAVRPKGDTSGKSVVVKEEVAELVKRLMEGLEGGEIRRRMKDLQKFAACAVMEDGSSTRTLSKLAQKWKSLGRFYQKNIECGN 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01621 523 CDD GT1_Gtf-like 32 490 IPR002213 GO:0008194
Cca01g01621 523 ProSitePatterns UDP-glycosyltransferases signature. 385 428 IPR035595 -
Cca01g01621 523 Gene3D Glycogen Phosphorylase B; 32 497 - -
Cca01g01621 523 PANTHER GLYCOSYLTRANSFERASE 30 511 - -
Cca01g01621 523 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 31 510 - -
Cca01g01621 523 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 292 436 IPR002213 GO:0008194
Cca01g01621 523 Gene3D Glycogen Phosphorylase B; 288 492 - -
Cca01g01621 523 PANTHER UDP-GLYCOSYLTRANSFERASE 72B1 30 511 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01621 Cca-Chr1 37100569 37102332 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01621 26 513 Glycosyltransferase AT1G01420 41.955 1.24e-127 379
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01621 K08237 - gmx:100775351 775.007