Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01606 ATGGTGAAACACATCATCAAAATTCCAGGGCTAGAAGATCTAAACCTCAAAGACTGTTGCATCTACAAGGTTCCTTACAATATCCGAGAGGTGAACAAGGATGCCTACACCCCTCAATGGATCTCAATAGGCCCAATTCACCTTTCCAAAGAGAAATTCAAGCCAATGCAAGAGCAAAAGAAAAGGTACTTCCACTACTTCTGGGAGCGAGTCTCAAACGAAGAAGCCATGAAGAACTACAAACTCTACCTCAAGACCGAAGAAGAAGAGATTCGCCAATGCTACGCAGAGAAATTCCCTGACTTGACCAAAGAGAAATTCGTGGACATGGTGCTGTTGGATGCTGTGTTCATCATGGAACTCTTGTTGAGAAACTGTAAGTGGAAATCGGAAAACATCAGGCACGAGCAAGAGTTCCAGCCAACCGAGTCCTTTCGTCAGAGACACAGTGAGGATCCCATCGTTATGCAGCCCTGGCTCAGTAGGAACATCGCTAGGGACTTGATCCTTCTGGAGAATCAAATCCCTTTCTATGTCCTGCACAAACTCTATGAAGACGTTGTCCCTTGTCAATACAAGCAAGAAAAGCACACTGCAGGGTTTGTTGATCTTGCCATCGAGTACTTTGTTTTCTATGATACCCAAATGTCTTCTTCTGATAAAACCAAGAAACACTCTTCTGGCTCACCCAAGTCAAAGAGCGAAGATAGCTCTAGGGATCCAAAATATGTACACTTCACTGATCTGATGAGAGGCTCTTACCTTTCCCGTACTGAGCGAAAAAGTGATAATGCCCCTCATAATTTAAGAACTGCAACAAAGTTGAAGGACTCAGGAGTGAGCTTTGAGAAAGATGTGAAGAGAAAGTTACTAGACATAACCTTCGAGAAGAAGCGAATTCTGAGTTCATTTCTTTGCTTTGGTTGCTTGCCATGCCTGAACCACTTCAAGGCACGTTTCATAATCCCCCAGTTGAAGGTGGACCACACAACCGAATGCGTGTTGAGGAACCTCATTGCCTTGGAGCAGTGTCACTATCCCGAGAAGCCTTACATCTGCAACTACGTTTCTCTCATTGACTCTCTCATTCACACGCAGCATGATGTGGAGATGCTGGTTGAGAAGGAAGTGATCGTGCATGAGTTGGGGAGTGATAAGGAAGTGGCCACGCTTGTTAATGGTCTATGCAAACACGTTGTGACAAACTCAACGTGTTACTTTGAAACTGTAAATGATCTCAACGACCATTACCTGAACAAATGGAACCATACGGTGGCAGCGTTGAGGTTGGTGTACTTCAGAGACCTTTGGAGGGCAAGTTCCACTGTGGTTGGGATTGCTGTGCTCGTTTTCGCTGTGTTTCAATTCCTCCGTGCTGTGCGTGCTCTCTTCTAG 1395 0.4509 MVKHIIKIPGLEDLNLKDCCIYKVPYNIREVNKDAYTPQWISIGPIHLSKEKFKPMQEQKKRYFHYFWERVSNEEAMKNYKLYLKTEEEEIRQCYAEKFPDLTKEKFVDMVLLDAVFIMELLLRNCKWKSENIRHEQEFQPTESFRQRHSEDPIVMQPWLSRNIARDLILLENQIPFYVLHKLYEDVVPCQYKQEKHTAGFVDLAIEYFVFYDTQMSSSDKTKKHSSGSPKSKSEDSSRDPKYVHFTDLMRGSYLSRTERKSDNAPHNLRTATKLKDSGVSFEKDVKRKLLDITFEKKRILSSFLCFGCLPCLNHFKARFIIPQLKVDHTTECVLRNLIALEQCHYPEKPYICNYVSLIDSLIHTQHDVEMLVEKEVIVHELGSDKEVATLVNGLCKHVVTNSTCYFETVNDLNDHYLNKWNHTVAALRLVYFRDLWRASSTVVGIAVLVFAVFQFLRAVRALF 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01606 464 Pfam Plant protein of unknown function 21 450 IPR004158 -
Cca01g01606 464 PANTHER PROTEIN, PUTATIVE (DUF247)-RELATED-RELATED 1 462 IPR004158 -
Cca01g01606 464 MobiDBLite consensus disorder prediction 219 240 - -
Cca01g01606 464 PANTHER DUF247 DOMAIN PROTEIN 1 462 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01606 Cca-Chr1 36690892 36692286 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01606 - - ccaj:109792511 814.683