Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01593 ATGGAGTTTTTGAAGCTTTTCATTGTGGCATTAATGCCAGTTTTGAAGGTATTGTTGATTACTCTTGTGGGGACAATTCTTGCCATTAATCGCTTTAACATACTCGGGGAAACTGCCAGAAAAAACTTGAATACTTTGGTATATATTGTCTTCTCTCCAACTCTAGTTTGTAGCAGCCTAGCTGAAACAATAACTTTAAGGAATGTCGTTAAACTGTGGTTCATGCCCGTGAATATTCTTATCACGTTTCTCATTGGGACAGTTCTTGGATTGTTAGTCGTTAAACTAACTAGAGTTCCTCCTAACCTTCAAGGCCTGGTGTTGGGTTGTTGTGCAGCAGGAAATCTGGGAAATTTACCTATAATTATAGTTCCAGCTGTCTGTAAACAAAGTGGCAGTCCTTTTGGAGATGTGAATGTTTGCTACAAAAATGCACTAGCATATGCTTCTCTATCAATGGCACTAGGTTCCGTTTACATTTGGTCTTATGCATACAACCTTGTTCGATTATATTCACCAAAGATTTCCAAAGAAATCAAAGTTGATGATGGCTCCATGGTAAATCTAGTGTTAGCAACAAAAACTGATCCAGAAAACCCTTCAACATGTTCCACAGGATTACCTGTTGTTACTGCTGATGATAGATCACAACCTGAAAATCATGTGAAGCAATTTGAAATTCAATGTACAATGCGTGATGGACAAGTAGAAGAGGTACCAAAAAAGAAAACGATTGTGAAACAGTTGACAATATTAGTCGACAAAATCAACCTGAAGGTACTATTCACACCCTCCACGATTGGAGCGATTGTTGGTTTAGTGATCGGAATAGTTCCTCAATTTCGAAAACTATTAATTGGGGATAGTGCACCTCTTCGTGTGATTCTGGAGTCTGTAGTCATGTTGGGGTATGCTTCCATTCCAGCAATGACTTTGCTGGTTGGAGCAAATCTTATTAAAGGTTTGAATGCACTAGGAAAGCAACTTCCACTTGTTATTGGAGTTATTGTGGTTAAATGTATTGTCTTGCCAGCATTAGGTGTAGGCATAGTGAAAGCTGCTATTCGTTTGGGGTTGATCCACCGCGATCCATTATATGAGTTTCTTTTGCTGCTTCAGTTCGCCCTTCCTCCTGCCGTGACCATGAGTACGATCACTCAATTATTTGGAGCTGGTGAAGGCGAATGCTCAATTATCATGTTTGCAACTTATTCCTTTGCTGCTGTTTCAGTAACACTTTGGTCCACATTTTATATGTGGCTTGTATTATAA 1272 0.3923 MEFLKLFIVALMPVLKVLLITLVGTILAINRFNILGETARKNLNTLVYIVFSPTLVCSSLAETITLRNVVKLWFMPVNILITFLIGTVLGLLVVKLTRVPPNLQGLVLGCCAAGNLGNLPIIIVPAVCKQSGSPFGDVNVCYKNALAYASLSMALGSVYIWSYAYNLVRLYSPKISKEIKVDDGSMVNLVLATKTDPENPSTCSTGLPVVTADDRSQPENHVKQFEIQCTMRDGQVEEVPKKKTIVKQLTILVDKINLKVLFTPSTIGAIVGLVIGIVPQFRKLLIGDSAPLRVILESVVMLGYASIPAMTLLVGANLIKGLNALGKQLPLVIGVIVVKCIVLPALGVGIVKAAIRLGLIHRDPLYEFLLLLQFALPPAVTMSTITQLFGAGEGECSIIMFATYSFAAVSVTLWSTFYMWLVL 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01593 423 PANTHER - 1 422 IPR045033 GO:0080162
Cca01g01593 423 Pfam Membrane transport protein 10 414 IPR004776 GO:0016021|GO:0055085
Cca01g01593 423 PANTHER EFFLUX CARRIER FAMILY PROTEIN, PUTATIVE-RELATED 1 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01593 Cca-Chr1 35909872 35925555 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01593 K24139 - gmx:100797947 660.988