Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01576 ATGGGGAACGAGGAGGAAGAAGAAGAAGTGGTGGCTGAAGTCGAAGCAGTGGAAGCGGTGTACGGAACCGATTGCGTCGTTCTCCGTTCATTTCCTCCCCATTTCCACATCTCTCTCAAACCCAGAACCGCCGATGTTTCCTCCCAACAGTTTGTAGAAGCTGTTTTGGAGATACGAGCAAGCCCACAGTATCCTAAAGAACCACCTTCGGTTGATCTTGTGGATAGCAAGGGTCTGGATGAACAGAGACAAAAACATCTATTAAATTACATACAGAGTAAATCCAACGAGCTCTCCCTTTGTTTAATGCTTGTAGCTCTCTGTGAGGAAGCTGTAGAGAAACTTTCAGCTATGAATCATCCTGATGGTGATTGTCCGTTGTGTTTATTCCCTTTGGTCCCAGAAGATCAGCAAAGTGAAACCTTGCCTTTTATGAAGTTAATGTCTTGCTTTCATTGCTTTCACAGTGAATGTATCATTAGATGGTGGAAATGGCTTCAAAATTCTAAAGAAGTAGACTCTGCTAATACAGATGGTGCAGCAGCACATCATAACCAAGATAAGCATAAGGAAATGGAAGAGAGTGTTGGTAACTGCCCAGTCTGTCGCAAGACTTTTCTTGCCAAGGATTTAGATCATGTGCTTGCCCTAGTTGGTTCATATACTTCCCAATTGAGTTTGGAAAATGATGAAGTCAATGATGAGGAAAAGCTCCTTCAATCTGAGGATGAGATCATTAGGAGACAGAAATTTGAAGCCATCTTAAGTTTACAGAAGGAGAACAGTGGTTTGATTGAACCCAAAAGAGATATAGTAATATTGCCGGGCATGTATCTTCCACAACCAGTTGCAATGCCCAGCTCCACGTCAACCAAGGAATCTGATGAGAACCAACAAAAAGATCCACCTGCAGTTGTGTCTACCAAAGAATCCGATGATCAGCTACAAAAAGATCCATCTGCAGGTGTGTCAGGAAAACATGCTGGTGGGACATCCAATGGACCTAGTTCTAGCAGGCATAGGAATTTCGGTGCAAGGAGGCAGAAAGCAAGAAGTGATCATCACACTAGTTCAACCGTAAGAAATCCCAGAAAACCAGTCCAACAGTGGGTAAGAAGAGATACTCCTAGCAATAATCAATAA 1143 0.4296 MGNEEEEEEVVAEVEAVEAVYGTDCVVLRSFPPHFHISLKPRTADVSSQQFVEAVLEIRASPQYPKEPPSVDLVDSKGLDEQRQKHLLNYIQSKSNELSLCLMLVALCEEAVEKLSAMNHPDGDCPLCLFPLVPEDQQSETLPFMKLMSCFHCFHSECIIRWWKWLQNSKEVDSANTDGAAAHHNQDKHKEMEESVGNCPVCRKTFLAKDLDHVLALVGSYTSQLSLENDEVNDEEKLLQSEDEIIRRQKFEAILSLQKENSGLIEPKRDIVILPGMYLPQPVAMPSSTSTKESDENQQKDPPAVVSTKESDDQLQKDPSAGVSGKHAGGTSNGPSSSRHRNFGARRQKARSDHHTSSTVRNPRKPVQQWVRRDTPSNNQ 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01576 380 SUPERFAMILY UBC-like 6 115 IPR016135 -
Cca01g01576 380 SUPERFAMILY RING/U-box 117 209 - -
Cca01g01576 380 ProSiteProfiles Zinc finger RING-type profile. 125 203 IPR001841 -
Cca01g01576 380 PANTHER RING FINGER PROTEIN 25 5 372 IPR039133 GO:0061630
Cca01g01576 380 MobiDBLite consensus disorder prediction 283 380 - -
Cca01g01576 380 SMART RWD2001b 12 118 IPR006575 GO:0005515
Cca01g01576 380 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 121 217 IPR013083 -
Cca01g01576 380 MobiDBLite consensus disorder prediction 361 380 - -
Cca01g01576 380 ProSiteProfiles RWD domain profile. 12 118 IPR006575 GO:0005515
Cca01g01576 380 SMART ring_2 125 202 IPR001841 -
Cca01g01576 380 MobiDBLite consensus disorder prediction 326 341 - -
Cca01g01576 380 Gene3D Ubiquitin Conjugating Enzyme 1 120 IPR016135 -
Cca01g01576 380 Pfam RWD domain 8 114 IPR006575 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01576 K10640 - gmx:100791789 606.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g01576 01 35203504 35212463 Cca01g01576 01 35203504 35212463 ECH