Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cca01g01574 | ATGGGAATCCTCGCCTTGCCCTTAGTCATCTCCGTTCTCAAACCCCAcaccgccactctcctccgcccctcacactccctcctccgccaccgcaaccgccacttcacccccgccgtctccgccgccaccgcTCCTTCTTCTCACTCTCCTTCTCTCTCGCGCCACTCTTCTTCCGCTTCAACACATTCCGACACTCCTTCGCTTAACTCCTCCACCCTCACCTTCCAGCAAGCCATTCAGCGCCTTCAGGAATATTGGGCTTCCGTTGGATGTTCCGTAATGCAATGCAGCAACACAGAGGTTGGAGCTGGGACTATGAATCCTCTTACATATTTACGGGTTCTTGGTCCAGAACCATGGAATGTTGCGTATGTGGAACCTAGCATTCGCCCTGATGATAGTCGATATGGAGAAAACCCAAATAGGCTCCAAAGACACACTCAATTTCAGGTGATATTGAAGCCTGATCCTGGAAATTCACAGGATTTATATATCCGCAGCCTTTCTGCTTTAGGTAGTATTGATGTTACTGCACATGATATAAGATTTGTGGAAGACAACTGGGAGAGTCCGGTTCTTGGTGCTTGGGGTTTGGGCTGGGAAATCTGGATGGATGGCATGGAGATTACTCAATTCACCTACTTTCAGCAGGCTGGAAGTCTTCAGTTATCACCTGTATCTGTAGAAATTACTTATGGCCTTGAGCGTATCCTCATGTTACTGCAGGGGGTTGATCACTTCAAGAATATAAAATATTCTGATGGAATTACATATGGGGAGCTGTTCTTGGAGAATGAGAAGGAAATGAGTGCATATTATTTGGAGCATGCTAGTGTTGATCATGTTCAAAAACATTTTGATTTCTTTGAGGAGGAAGCTCGTTCCTTACTTTCTTCAGGCCTTGCAATCCCTGCGTATGATCAGCTTCTGAAAACATCTCATGCTTTTAATATCTTAGACTCCAGAGGCTTTGTTGGAGTAACAGAGCGTGCTCGATATTTTGGTCGCATGCGTAGTTTAGCTCGCCAGTGTGCACAACTTTGGTTGAAGACAAGGGAGATGCTTGGCTTCCCCCTTGGTTCTATCTCTGAACCCAATCATTTTGTATTGCCAAAAGAAGTTTTGGAGGCTGCACGTGAGAAGGTGCATGATCATTCAAGGGCATTTGTTCTTGAAATTGGGACCGAAGAGATGCCACCTCAAGATGTTGTTGATGCAAGCAAGCAACTGAAAGATTTAGTGCTGCAACTACTTGAACGGCAAAGGTTAAAGCATGGTGAAGTGCAAGCTTTTGGCACCCCACGTAGATTAGTGATTGCTGTTGAAAATCTTTGCACAAAACAAGCAGAAAAGGAGGTTGAAGTTCGAGGTCCTCCTGTTTCAAAAGCATTTGATCATGAAGGAAATCCAACGAAGGCGATTGAAGGTTTTTCTCGTAGATACTCTGTTCCACTTGACCTGGTATACAGAAAGGTTGATGGGAAAACAGAGTATGTTTATGCCCGTATAAAGGAGTCATCAAGACATGCTCTGGAGGTTTTGTCTGAAGATTTACCTGCTACTATTGCTAAAATTTCATTTCCAAAGACAATGCGTTGGAATTCTCAGGTGATGTTTAGCAGGCCTATCCGTTGGATTTTGGCCCTGCATGGAGATGTAGTAGTTCCATTTATGTTTGCTGGGGTGACGAGTGGAAACTTGTCTTGTGGTCTCCGAAATACTTCTTCAGCTGTCGTCCAGGTTGATGGTGCAGAATCTTATTCAGTTGCAATGAAAGACGTGGGAATCAATGTTTCAGTCGAGGATCGTAAGAAAATTATTTTTGAGCAATCTAATGCATTAGCAGAAAGTGTAAATGGCCAAATTCTTATTCCAAAAGGTTTGCTTGATGAGGTTGTAAATCTTGTTGAGGCACCTTTTCCTGTGCTTGGAAAGTTTAAAGAAACCTTCTTAGATCTTCCAAAAGATCTTTTGACTATGGTTATGCAAAAGCACCAAAAGTATTTTGCTGTATGTGATGCTAATGGGCAATTGTTGCCTTATTTTGTTGCCGTTGCAAATGGAACAATTGATGAGACTACAGTGAGGAAAGGAAATGAAGCTGTGCTCAGGGCTCGCTATGAAGATGCTAAGTTCTTTTATGAGATGGACACTCGTAAAAGGTTTTCAGAATTCCGAAAGCAACTGAAAAATATTCTCTTTCATGAGAAGCTTGGAACCATGCTGGATAAGATGACTCGTGTTGAAAACATGGTTACTAAGCTAAGTTGCACCCTAGATATCAATGAAGATGTGCAACAAATTATTCAGGATGCTGCCTCCCTAGCTATGTCTGATCTTGCAACTGCAGTTGTCACTGAATTTACCTCACTTTCAGGAATTATGGGGCGTCACTATGCCCTTAGAGATGGATACTCAGAGCAGATTGCAGAGGCCTTGCATGAGATTACACTTCCTAGATTTTCTGGGGACATGCTTCCCGAAAGTGATGCTGGCATAGTTTTGGCAATTGCTGATAGATTAGATAGCCTGGTTGGTTTATTTTCTGCTGGTTGTCAACCTAGTTCGACAAATGATCCATTTGGTCTGCGAAGAATCTCATATGGTCTTGTGCAACTATTGGTGGAAAAGAATAAAAATCTAAATTTTAGGAAGGCCCTGGAACTAGCTGCAGATGTCCAGCCCATTAAAGTAGATCCTCATGTAATAGATGATGTACATCAATTTGTTACTCGAAGATTAGAGCAATTTTTGGTTGACAAGGGGGTGAGTGCAGAATTTGTTCGTTCAATCCTTATAGAAAGAGCAAATTTTCCCTGTCTCGCCGCAAAATCGGCTCATAAAATGGAAGAATTATCAAGAGGGAGCCTTTTTCCTAAAGTAATTGAAGCATACTCCCGGCCGACAAGAATTGTCCGTGGAAAGGAAGATGAACTCCATTTGGAGGTGGATGAAGCTTCTTTTGTGACAAATGAAGAGAGAGTTTTATGGAGCACATTTTTGTCAGTTAAAAAGAGTATCAACCCTGGTCTTGACATTGATGAATTTGTTGAAATTTCATGTCAACTAATACAGCCGCTCGAGGATTTCTTTAATAATGTCTTCGTAATGGTGGACGATGACAGGATCAGAGTAAACAGGTTAACTCTGCTAAAAGGAATTGCTGAACTCCCTAAAGGAATAGCAGACCTTACTGTTCTACCAGGATTTTAA | 3213 | 0.408 | MGILALPLVISVLKPHTATLLRPSHSLLRHRNRHFTPAVSAATAPSSHSPSLSRHSSSASTHSDTPSLNSSTLTFQQAIQRLQEYWASVGCSVMQCSNTEVGAGTMNPLTYLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLYIRSLSALGSIDVTAHDIRFVEDNWESPVLGAWGLGWEIWMDGMEITQFTYFQQAGSLQLSPVSVEITYGLERILMLLQGVDHFKNIKYSDGITYGELFLENEKEMSAYYLEHASVDHVQKHFDFFEEEARSLLSSGLAIPAYDQLLKTSHAFNILDSRGFVGVTERARYFGRMRSLARQCAQLWLKTREMLGFPLGSISEPNHFVLPKEVLEAAREKVHDHSRAFVLEIGTEEMPPQDVVDASKQLKDLVLQLLERQRLKHGEVQAFGTPRRLVIAVENLCTKQAEKEVEVRGPPVSKAFDHEGNPTKAIEGFSRRYSVPLDLVYRKVDGKTEYVYARIKESSRHALEVLSEDLPATIAKISFPKTMRWNSQVMFSRPIRWILALHGDVVVPFMFAGVTSGNLSCGLRNTSSAVVQVDGAESYSVAMKDVGINVSVEDRKKIIFEQSNALAESVNGQILIPKGLLDEVVNLVEAPFPVLGKFKETFLDLPKDLLTMVMQKHQKYFAVCDANGQLLPYFVAVANGTIDETTVRKGNEAVLRARYEDAKFFYEMDTRKRFSEFRKQLKNILFHEKLGTMLDKMTRVENMVTKLSCTLDINEDVQQIIQDAASLAMSDLATAVVTEFTSLSGIMGRHYALRDGYSEQIAEALHEITLPRFSGDMLPESDAGIVLAIADRLDSLVGLFSAGCQPSSTNDPFGLRRISYGLVQLLVEKNKNLNFRKALELAADVQPIKVDPHVIDDVHQFVTRRLEQFLVDKGVSAEFVRSILIERANFPCLAAKSAHKMEELSRGSLFPKVIEAYSRPTRIVRGKEDELHLEVDEASFVTNEERVLWSTFLSVKKSINPGLDIDEFVEISCQLIQPLEDFFNNVFVMVDDDRIRVNRLTLLKGIAELPKGIADLTVLPGF | 1070 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cca01g01574 | 1070 | Hamap | Glycine--tRNA ligase alpha subunit [glyQ]. | 73 | 354 | IPR002310 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Cca01g01574 | 1070 | TIGRFAM | glyS: glycine--tRNA ligase, beta subunit | 386 | 1067 | IPR015944 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Cca01g01574 | 1070 | MobiDBLite | consensus disorder prediction | 39 | 69 | - | - | |
| Cca01g01574 | 1070 | SUPERFAMILY | Class II aaRS and biotin synthetases | 74 | 353 | IPR045864 | - | |
| Cca01g01574 | 1070 | Pfam | Glycyl-tRNA synthetase beta subunit | 389 | 932 | IPR015944 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Cca01g01574 | 1070 | TIGRFAM | glyQ: glycine--tRNA ligase, alpha subunit | 74 | 359 | IPR002310 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Cca01g01574 | 1070 | Hamap | Glycine--tRNA ligase beta subunit [glyS]. | 386 | 1067 | IPR015944 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Cca01g01574 | 1070 | PRINTS | Glycyl-tRNA synthetase alpha subunit signature | 127 | 142 | IPR002310 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Cca01g01574 | 1070 | PRINTS | Glycyl-tRNA synthetase alpha subunit signature | 206 | 226 | IPR002310 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Cca01g01574 | 1070 | PRINTS | Glycyl-tRNA synthetase alpha subunit signature | 229 | 244 | IPR002310 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Cca01g01574 | 1070 | PRINTS | Glycyl-tRNA synthetase alpha subunit signature | 148 | 168 | IPR002310 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Cca01g01574 | 1070 | PRINTS | Glycyl-tRNA synthetase alpha subunit signature | 180 | 204 | IPR002310 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Cca01g01574 | 1070 | PRINTS | Glycyl-tRNA synthetase alpha subunit signature | 314 | 330 | IPR002310 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Cca01g01574 | 1070 | PANTHER | GLYCYL-TRNA SYNTHETASE | 385 | 1070 | IPR015944 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Cca01g01574 | 1070 | ProSiteProfiles | Heterodimeric glycyl-transfer RNA synthetases family profile. | 74 | 349 | IPR006194 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Cca01g01574 | 1070 | Gene3D | Bira Bifunctional Protein; Domain 2 | 60 | 277 | IPR045864 | - | |
| Cca01g01574 | 1070 | Gene3D | Class II aaRS and biotin synthetases; domain 2 | 278 | 357 | - | - | |
| Cca01g01574 | 1070 | ProSiteProfiles | Heterodimeric glycyl-transfer RNA synthetases family profile. | 743 | 1032 | IPR006194 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Cca01g01574 | 1070 | CDD | GlyRS_alpha_core | 74 | 353 | IPR002310 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Cca01g01574 | 1070 | Pfam | Glycyl-tRNA synthetase alpha subunit | 75 | 353 | IPR002310 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Cca01g01574 | 1070 | SUPERFAMILY | HD-domain/PDEase-like | 716 | 865 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Cca01g01574 | Cca-Chr1 | 35126813 | 35179138 | Tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cca01g01574 | K14164 | - | gmx:100787365 | 1918.28 |