LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca01g01562	ATGGCGAGCGAAGAGGAGAACGGGGAATTCTACCTGCGTTACTACGTTGGCCACAAGGGGAAGTTCGGGCACGAGTTCCTAGAGTTCGAGTTCAGACCAGACGGAAAACTCCGTTACGCCAACAACTCCAACTACAAAAACGACACCATCATCCGCAAGGAGGTTTACCTTACCCCTGCCGTTCTCCGCGAGTGCCGCCGTATCATCGCCGAGAGCGAGATTATGAAGGAAGATGATAACAACTGGCCAGAACCTGATAGAGTGGGGAGGCAGGAGCTGGAGATTGTAATGGGGAACGAGCACATATCCTTCACCACCTCCAAGATTGGCTCTCTTGTTGATGTTCAGAGTAGCGCTGATCCTGAAGGGCTTCGGATCTTTTACTATCTTGTTCAGGATTTGAAAGCACGAGGAACAAATGGCCCAGGCATAAGTATAACCTCTACGAAAGATGCTAGCACTAGAACTGCTTCTGCAGAGAGGCTCTGGGAACCTTTACCTTCCAAAGGAAGAAAGGAGCTTATCAGCCTTGTGCAGGATTCTATGCAATGTGCAAACAACAGTTCAACGATAGGTCCTTTCTCTCAAAGGAAAAGGGTCACTGCCCCATCAGGCAAGGTAGATGGAAAATTTTTTTATACTACCCCGATGCCTCTGCATTCATCTACTGTCTCTGGGGGGTTATTGAGAAGCAAAGGAGATGGAAAACAGAAAAAAGAAGGTTCATGCGTTGGAACCAAAGGATTCTGTGCCCCAGATAATATCTTCTGGAGTCACCCTACTCCACATGGTGATTGGGAAGACTCCTTTCACCGGAATATAAAAGAAATTGTTAAATTCCGGGGCAGTGAAGAGTTTTGGGAAGTGGCCAAGCTACATGACCGTGAATTATCTTATACTGCAGAGTTACTTGATGAGCGTTACTTACAGTCATGGGACTTTGAAAGCTGGTGCAAGATTCACGCAAAGAGGCCAGAGTTTCTTGAGCAGATCCCGAAATCGTTTTTTGATTTGATAGACAAGTCTCTAAAAGTAAACCCAAGAAATAGAATTAGCGCAGAAGAAGTTCTAAGACATGAATTCTTTGATTCATGTAATGAGTCCCTAAGGAAGCAAAGGATGATTAATCGAGCTAAGGTCGGAAGCTGCAGCTTCTAA	1158	0.4577	MASEEENGEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTIIRKEVYLTPAVLRECRRIIAESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSSADPEGLRIFYYLVQDLKARGTNGPGISITSTKDASTRTASAERLWEPLPSKGRKELISLVQDSMQCANNSSTIGPFSQRKRVTAPSGKVDGKFFYTTPMPLHSSTVSGGLLRSKGDGKQKKEGSCVGTKGFCAPDNIFWSHPTPHGDWEDSFHRNIKEIVKFRGSEEFWEVAKLHDRELSYTAELLDERYLQSWDFESWCKIHAKRPEFLEQIPKSFFDLIDKSLKVNPRNRISAEEVLRHEFFDSCNESLRKQRMINRAKVGSCSF	385

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca01g01562	385	Gene3D	Mago nashi	7	139	IPR036605	GO:0005634
	Cca01g01562	385	SUPERFAMILY	Protein kinase-like (PK-like)	235	371	IPR011009	-
	Cca01g01562	385	PANTHER	PROTEIN MAGO NASHI HOMOLOG	6	136	IPR004023	GO:0008380\|GO:0035145
	Cca01g01562	385	SUPERFAMILY	Mago nashi protein	9	136	IPR036605	GO:0005634
	Cca01g01562	385	Gene3D	Transferase(Phosphotransferase) domain 1	227	381	-	-
	Cca01g01562	385	CDD	Mago_nashi	9	136	IPR004023	GO:0008380\|GO:0035145
	Cca01g01562	385	Pfam	Mago nashi protein	10	136	IPR004023	GO:0008380\|GO:0035145

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca01g01562	Cca-Chr1	34557163	34560738	Dispersed/Proximal

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca01g01562	K12877		K02214	gmx:100783107	347.436