Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01541 ATGGAAGCACTAAAACTGTGCAATCTAACATGGCACCCACTGAAGCACTTCATTCAATCTCACGCATTTCGTCGAACACCTCGCACGCTAGTTCTCCGCGCGTGCTCTTCTTCCACCACCGCCGACACTAGGGCCGCCGGTCGCGGCCGCCGGAGCTCGCCGTCGTCGTCCACCACTTCAACTTCCGACAGGGAAGCCGTTCGAGCCATTCGCTTGAAGAAGGTTGAAGAATTGAGAAGCAAGGGGCTTGATCCATATGCTTATGAATGGGACAAAACTCATGGTGCTAATCAGCTGCAAGATATCTATAGAGATTTAGGAAATGGCGAGGAAAAAAACAGTGAGAATGACCACATATCTGTTGCGGGAAGAATTGTTGCTAGGAGGGCATTTGGAAAGCTTGCCTTTCTCACACTAAGAGATGATTCAGGGACAATTCAGCTCTATTGTGATAAGGAGAGACTCATAGGTGATCAGTTTGAACAGTTGAAGGCGCATGTTGATATTGGTGATATATTAGGTGCAAGAGGAACAATAAAACGCACAGAAAAAGGAGAACTTTCTGTGTGTGTTCTATCTTTTGCAATCCTTACAAAATCTCTGCTCCCGCTGCCTGACAAATATCATGGACTAACTGATATAGATAAACGTTATCGTCAGAGGTATGTAGATATGATTGCAAATCCAGAGGTAGCAGATGTATTCCGTAAAAGAGCAAAGGTTGTATCAGAGATACGGAGGACAATGGATTCTTTAGGTTTTGTTGAAGTTGAAACTCCAGTTTTGCAGGGTGCAGCTGGGGGAGCAGAAGCCAGACCGTTTATTACATACCATAATTCTCTTGGAAGGGACTTATATCTGAGAATTGCAACTGAATTACATCTAAAGAGAATGCTGGTGGGTGGTTTTGAAAAAGTATATGAGATTGGTCGAATATTTAGAAATGAAGGAATTTCAACTCGACATAATCCTGAATTTACAACTATAGAGATGTATGAAGCATACTCAGATTATCAAAGCATGATGAATTTGGCAGAGGAGATCGTCACTCGATGTGCTCTTGCAGTTCATGGGAAGCTTTCCATTGATTATCAGGGAGTCGAGATATGTCTGGAAAGACCTTGGAGGAGGGAGACTATGCACAACCTTGTTAAAGAAACTGCCGGGGTTGATTTCAATGAATTGGGAAATGATCTAGAGGTTGCAAAGCGAGTTACTCTGGATACCCTCGGAAAGAATCTTGATAACAAGGATAAAGGTTCTATTGAAGCTTGCCAATCCGTTGGTCATGTTCTCAATGAGGTTTTTGAGATTTTTGTAGAACCAAAGCTCATCCAACCTACATTTGTTTTGGACTATCCAATTGAGATATCTCCACTGGCCAAACCACACAGAAGATCCACAGGTTTGACAGAGAGATTTGAACTTTTCATTTGTGGTCGTGAGTTGGGCAATGCATTCTCTGAATTGACTGATCCTTTAGATCAGAGAGGACGCTTAGAAGATCAAATTAGGCAGCATGAAAAGAAGAGAGCAGCTGTTTCAACAAAAGATGATAAAAAGGATGGAATGGAAGATGATGATGACTTGTATGAAGTGACTCTTGATGATGACTTTCTAACAGCTTTGGAATATGGAATGCCTCCAGCTTCTGGAATGGGACTTGGAATTGATAGGCTCGTGATGCTTTTGACAAATTCTCCCAGTATTCGAGATGTTATTGCCTTCCCAGTACTCAAGCTCCAGCAATAG 1752 0.4258 MEALKLCNLTWHPLKHFIQSHAFRRTPRTLVLRACSSSTTADTRAAGRGRRSSPSSSTTSTSDREAVRAIRLKKVEELRSKGLDPYAYEWDKTHGANQLQDIYRDLGNGEEKNSENDHISVAGRIVARRAFGKLAFLTLRDDSGTIQLYCDKERLIGDQFEQLKAHVDIGDILGARGTIKRTEKGELSVCVLSFAILTKSLLPLPDKYHGLTDIDKRYRQRYVDMIANPEVADVFRKRAKVVSEIRRTMDSLGFVEVETPVLQGAAGGAEARPFITYHNSLGRDLYLRIATELHLKRMLVGGFEKVYEIGRIFRNEGISTRHNPEFTTIEMYEAYSDYQSMMNLAEEIVTRCALAVHGKLSIDYQGVEICLERPWRRETMHNLVKETAGVDFNELGNDLEVAKRVTLDTLGKNLDNKDKGSIEACQSVGHVLNEVFEIFVEPKLIQPTFVLDYPIEISPLAKPHRRSTGLTERFELFICGRELGNAFSELTDPLDQRGRLEDQIRQHEKKRAAVSTKDDKKDGMEDDDDLYEVTLDDDFLTALEYGMPPASGMGLGIDRLVMLLTNSPSIRDVIAFPVLKLQQ 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01541 583 CDD LysRS_core 228 580 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Cca01g01541 583 MobiDBLite consensus disorder prediction 35 65 - -
Cca01g01541 583 Pfam tRNA synthetases class II (D, K and N) 215 579 IPR004364 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Cca01g01541 583 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 235 577 IPR006195 -
Cca01g01541 583 MobiDBLite consensus disorder prediction 503 527 - -
Cca01g01541 583 Pfam OB-fold nucleic acid binding domain 120 193 IPR004365 GO:0003676
Cca01g01541 583 Gene3D - 57 208 IPR012340 -
Cca01g01541 583 PANTHER LYSYL-TRNA SYNTHETASE 54 583 - -
Cca01g01541 583 Hamap Lysine--tRNA ligase [lysS]. 70 582 IPR002313 GO:0004824|GO:0005524|GO:0006430
Cca01g01541 583 Coils Coil 497 517 - -
Cca01g01541 583 Gene3D Bira Bifunctional Protein; Domain 2 209 583 IPR045864 -
Cca01g01541 583 CDD LysRS_N 118 225 IPR044136 GO:0000166
Cca01g01541 583 PANTHER LYSINE--TRNA LIGASE 54 583 - -
Cca01g01541 583 PRINTS Lysyl-tRNA synthetase signature 250 260 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Cca01g01541 583 PRINTS Lysyl-tRNA synthetase signature 266 282 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Cca01g01541 583 PRINTS Lysyl-tRNA synthetase signature 295 308 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Cca01g01541 583 PRINTS Lysyl-tRNA synthetase signature 313 330 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Cca01g01541 583 PRINTS Lysyl-tRNA synthetase signature 446 462 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Cca01g01541 583 SUPERFAMILY Nucleic acid-binding proteins 65 206 IPR012340 -
Cca01g01541 583 TIGRFAM lysS_bact: lysine--tRNA ligase 69 581 IPR002313 GO:0004824|GO:0005524|GO:0006430
Cca01g01541 583 SUPERFAMILY Class II aaRS and biotin synthetases 213 579 IPR045864 -
Cca01g01541 583 MobiDBLite consensus disorder prediction 503 524 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01541 Cca-Chr1 33823988 33838163 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01541 K04567 - gmx:100787720 1049.27