Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01540 ATGGCGGCAACAACATCAGagagtgagaagaagcaggaagagggagcggaagCTGAACAAGTGGTGAATCCATGGGAGGTTTCCGCCAAAGGCAAAATCGATTACGACAAATTAATCGACCGTTTCGGTTGCCAGAGGCTCGACCAATctctcatttcacgcctccaccgtctcacctctcgcctcCCTCACGTTTTCCTCCGACGCGGCGTTTTCTTCGCCCACCGCGATTTCGCCGATATTCTTGACGCCTACGAGAGGGGCGATAAGTTCTACTTGTACACCGGACGTGGACCTTCCTCCGAAGCCTTGCATTTGGGACATTTGATTCCCTTCATGTTCACTAAGTATTTGCAAGATGCATTTAAGGTTCCTCTGGTTATACAGCTCACTGACGATGAGAAGTTCATGTGGAAAAATCTTACTATAGAGGAGAGCCAAAGACTTGCAAGAGAGAATGCAAAGGACATAATTGCTTGTGGTTTTGACATTTCAAAGACATTTATATTTGCTGATTTCAGTTATGTTGGCGGTTCCTTCTACAAGAACATGTTAGAGGTTGCAAAGCGTGTGACTTATAACCAGGCTGTGGGCATCTTTGGTTTCACCGGGGAAGATCATATTGGAAAAGTTAGTTTTCCACCTGTGCAGGCCGTTCCATCATTTCCAAGTTCATTTCCTCACCTATTTTCTGGAAAAGAGAATCTCCGTTGTTTAATTCCTTGTGCGATTGACCAGGATCCATATTTTAGAATGACACGAGATGTTGCTCCTCGAATAGGTTGCCACAAGCCAGCCTTGATTGAATCATTATTCTTCCCTGCATTACAGGGGGAAACAGGGAAAATGTCTGCTAGTGATCCCAATTCTGCAATATATGTTACTGATTCTGCGAAAGATATTAAGAACAAGGTAAACAAGCATGCATTTTCTGGTGGGCAAGATTCTATAGAGAAACATAGGCAATTAGGGGCAAATCTTGAGGTAGATATACCAATCAAATACCTTACTTTTTTCCTAGAAGATGATGTGGAACTTGAACACATCAAGAAGGAATATGGAGAAGGGCGAATGCTAACAGGTGAGGTAAAGCAGCGCCTAGTTGAAGTTTTGACTGAACTAGTGGAGAGGCATCGTAGGGCCCGGGCTTCTGTGACTGAAGAGATGGTGGATGCATTTATGGCTATCAGACCACTTCCCCACATGTTTGACTGA 1215 0.4123 MAATTSESEKKQEEGAEAEQVVNPWEVSAKGKIDYDKLIDRFGCQRLDQSLISRLHRLTSRLPHVFLRRGVFFAHRDFADILDAYERGDKFYLYTGRGPSSEALHLGHLIPFMFTKYLQDAFKVPLVIQLTDDEKFMWKNLTIEESQRLARENAKDIIACGFDISKTFIFADFSYVGGSFYKNMLEVAKRVTYNQAVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKENLRCLIPCAIDQDPYFRMTRDVAPRIGCHKPALIESLFFPALQGETGKMSASDPNSAIYVTDSAKDIKNKVNKHAFSGGQDSIEKHRQLGANLEVDIPIKYLTFFLEDDVELEHIKKEYGEGRMLTGEVKQRLVEVLTELVERHRRARASVTEEMVDAFMAIRPLPHMFD 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01540 404 PANTHER TRYPTOPHANYL-TRNA SYNTHETASE 8 404 - -
Cca01g01540 404 Pfam tRNA synthetases class I (W and Y) 89 374 IPR002305 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Cca01g01540 404 Gene3D - 286 403 - -
Cca01g01540 404 MobiDBLite consensus disorder prediction 1 21 - -
Cca01g01540 404 TIGRFAM trpS: tryptophan--tRNA ligase 90 394 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Cca01g01540 404 SUPERFAMILY Nucleotidylyl transferase 19 397 - -
Cca01g01540 404 PRINTS Tryptophanyl-tRNA synthetase signature 104 120 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Cca01g01540 404 PRINTS Tryptophanyl-tRNA synthetase signature 156 175 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Cca01g01540 404 PRINTS Tryptophanyl-tRNA synthetase signature 238 259 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Cca01g01540 404 PRINTS Tryptophanyl-tRNA synthetase signature 282 292 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Cca01g01540 404 PANTHER BNAA01G33520D PROTEIN 8 404 - -
Cca01g01540 404 CDD TrpRS_core 92 374 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Cca01g01540 404 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 99 109 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Cca01g01540 404 Gene3D HUPs 9 285 IPR014729 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01540 K01867 - gmx:100787194 747.273