Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01522 ATGTATGGCGGTGATGAAGTATCAGCAATAGTAATTGACTTGGGTTCACACACGTGTAAAGCTGGTTATGCCGGTGAAGATGCTCCCAAGGCGGTGTTTCCTTCTGTTGTTGGAGCAATTGATCAAATGGATGTTGATGAAGCAGATAATGGTGAAAAGAATTCCGCCTCTGCTGCGGAATCAAAGAATAATCTTAAAAATGATGATTCTGACAAGGCCAAGGGACCGAGGAAATTGTATGTAGGATCCCAGTCCTTGGGGTACCGTAGAGACCATATGGAGGTGCTGTCTCCGTTTAAGGATGGAATTGTTGCTGACTGGGATATTGTTGACAGCATATGGGATCATGCCTTCAGGGAGTGCCTATTGATTGATCCTAAAGAGCATCCTATGCTCCTTGCAGAGCCTTCTTCTAACACTCAACAACAGAGAGAAAGGACAGCAGAGCTTATGTTTGAGAAGTACAAAGCACCTGCATTATTTTTGGCAAAGAACGCTGTTCTGACTTCTTTTGCATCAGGGCGTGCAACGTCATTAGTTGTTGATGGTGGTGGAGGATCAATAACAGTTGCACCAGTACATGATGGTTATGTTCTTCAAAAGGGTGTGGCAACCTCTCCAATTGGAGGAGAGTTTCTTACAGACTGCTTGATGAAAAGCTTGGAAAGCAAGAGTATTATGATAAAACCACGGTATTCCTTTAGGAGAAAGGAAATACGCCCGGGAGAGTTTCAGACCGTAGATCTTGATTTTCCAAATACAACCGAAAGCTACAAACTCTACTCCCAGAGAGTGATTGCTAGTGATATCAAGGAATCTGTGTGCCGTGCTCCAGATACTCCATATGATGAGAGTGCATATTCAAACATCCCAATGACCTCATATGAGCTTCCTGATGGCCAGACTATTGAAATTGGGGCTGACAGATTCAAGATTCCAGATATTCTTTTCAATCCGTCCCTGGTTCAGTCAATTCCTGGCATGGAGAGCTTTGCAGAAATTGCTCCTTCAGTTCGTGGCCTGCCCCAAATGGTCATTGAAAGCATTAGTAAATGTGATGTAGACATTCGAAGAGAATTGTTTAGTAGTATACTGCTTGCTGGTGGTACAGCTTCGATGCAACAACTAAAGGAACGCCTTGAGAAAGACTTGCTAGAGGAATCCCCTCAAGCTGCCAGAGTAAAAGTATTGGCCAGCGGGAATGCTACTGAAAGAAGGTTTAGTGTTTGGATAGGGGGTAGCATATTGGCATCTCTTGGCTCCTTCCAGCAGATGTGGTTCTCCAAATCTGAGTATGAAGAGCATGGAGCTTCTTATATCCAAAGGAAGTGTCCATGA 1338 0.4395 MYGGDEVSAIVIDLGSHTCKAGYAGEDAPKAVFPSVVGAIDQMDVDEADNGEKNSASAAESKNNLKNDDSDKAKGPRKLYVGSQSLGYRRDHMEVLSPFKDGIVADWDIVDSIWDHAFRECLLIDPKEHPMLLAEPSSNTQQQRERTAELMFEKYKAPALFLAKNAVLTSFASGRATSLVVDGGGGSITVAPVHDGYVLQKGVATSPIGGEFLTDCLMKSLESKSIMIKPRYSFRRKEIRPGEFQTVDLDFPNTTESYKLYSQRVIASDIKESVCRAPDTPYDESAYSNIPMTSYELPDGQTIEIGADRFKIPDILFNPSLVQSIPGMESFAEIAPSVRGLPQMVIESISKCDVDIRRELFSSILLAGGTASMQQLKERLEKDLLEESPQAARVKVLASGNATERRFSVWIGGSILASLGSFQQMWFSKSEYEEHGASYIQRKCP 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01522 445 PANTHER ACTIN 2 444 IPR004000 -
Cca01g01522 445 SUPERFAMILY Actin-like ATPase domain 174 444 IPR043129 -
Cca01g01522 445 Gene3D - 181 384 - -
Cca01g01522 445 SUPERFAMILY Actin-like ATPase domain 5 181 IPR043129 -
Cca01g01522 445 MobiDBLite consensus disorder prediction 48 77 - -
Cca01g01522 445 Pfam Actin 4 444 IPR004000 -
Cca01g01522 445 Gene3D - 390 445 - -
Cca01g01522 445 Gene3D - 1 180 - -
Cca01g01522 445 SMART actin_3 7 445 IPR004000 -
Cca01g01522 445 CDD NBD_sugar-kinase_HSP70_actin 10 204 - -
Cca01g01522 445 Gene3D Actin; Chain A, domain 4 210 323 - -
Cca01g01522 445 PANTHER - 2 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01522 Cca-Chr1 32981821 32994508 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01522 1 444 Miscellaneous Gene Families AT3G53750 36.018 2.02e-91 280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01522 K11340 - gmx:100785066 842.802