Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01487 GTATTTCCTTGTGTTACTGCAAATTGTGGTCACTACTACCATCCTGAATGTGTCACAAGGCTACTTTCCTCTAGTATTGACACTGAACAAGAAGAAATGAGAAAGAGAGTTGCTATTGCGAAAGCATTTGTCTGTCCTCTTCATATATGTTCTTCATGTAAAAAAGGTGAAAATAAAAATGTTCATGATTTGCAGTTAGCAATATGTAGACGGTGCCCTAAAGCTTATCACAGAAAATGCTTACCCAAGGAAATTTCCTTCACATTTGATTATGATAAGGGCATTGAGCAGAGGGCCTGGGATGGTCTACTTGACCATCGAATTTTGATATATTGCATGGATCATGAGATAGATACCGAACTTGGGACTCCTGCTAGAAACCATCTGGTATTTCCTAATGTGAAAGTCAAAAGGAAGATAATCGATTACAAATTATTAGGCAAAGGAAAAGATACTATAAAATTGGGACAAAGTTTTGATGATCTTCCTTCTAAGAAAACATTGGTACCAAATCAGGTCACAAAGCGAAGTGTTAGCATCCAAGGTGGTGGTTCTGCCAAAGATATGGAAAAAATATATTTTAAGAAGGATATATGTTTCTCAAGTGGATCAGTCAAGTTTGACATGAACAGAAAATATTTGAAGGTTAAAAAGGTTTCTGCATTGAATAGTTCCTTACCAAATCCTGCAAAAAAGTTACCTTTGAAAAATACTAGCTTGTCCTGTAATTCAAGATTACATGAAGCTAAACCTCTGCAGCGAAAATTGGTTGGTGGAAGAATCGGAAAAACAGGTTTAGAGAAGCCTCTAGTAAAAAAAGTCAAAACATCACTTAACTTTAACAATGGTGATATGGAAAACAGTATCTTGTCTTTGATGAAAAAATCCATGTCTGCATTTAATGAGGAAAAATTCAAAAAGAACCATCAAGTCTTCTCTACAGCTTCATGTTTCACTGAAACTATATTTGACAAGAACCTTACTCAAGGAAAAATAGAAGGTTTAATTAAGGCTATTCAAACAGCTTTACAGAGGTTAGAAGAAGGATGTAGTATTGAAGAAGCAAAAACTATTTGTGATCCAGCAGTCGTCCATCAGCTTTTTATTTGGCAGAAGCGGCTCAAGGTCTATCTTGCACCTTTTCTTCATGGCATGCGATATACTTCCTTTGGTCGTCATTTCACTAAAGTAGACAAATTGAATGAGGTTGTTAATAGGCTTCATTGGTATGTTCAAAATGGAGACATGGTTTTAGACTTCTGTTGTGGTTCTAATGACTTCAGTTGTCTAATGAAATCAAAGCTTGAACAGATGGGGAAGCTGTGTTCATTTAAGAACTATGATTTATTCCAACCCAAGAATGATTTCAATTTTGAAAGGAGAGATTGGATGAGTGTCAATGCAGACGAATTACCCAACGGTTCTCAACTTATCATAGGGCTGAATCCTCCTTTTGGGGTTAAGGGTTGTCTTGCTAACAAATTTATTGACAAGGCATTGACATTTAAGCCAAAAATCCTTATACTTATTGTGCCAAAAGTAACTAAACGACTAGACAGAAAAAAAGGTGGATATGATTTAATTTGGGAGGATGATGACATGTTTTCTGGAAAGTCATTTTATCTACCTGGTTCTCTTGATATACGTGACAAGCAATTGGAAGACTGGAACCTGAAACCACCACCTCTCTACCTTTGGAGTCGCCCTGACTGGACCACTAGGCACAGGAAAATTGCTCAAAAGCATTGCCACACCAATGGGAAATATGATGTGCATGTGAAAGGAAAATATGTGAAGAATTATCTTATGGAGGAGAATCATGACTGTTATCAGGATTACCCTGGCTTGCATGCTCCTGGGGATGTTTTGAGTATAATCGATGGTGTTCTAGATGACAATGGTGACAATGTGCACCAGCAAGGTGCAACTAGCATTTCTCTGGGACAGTTGAAAGAGACAGTAATTTCTGATTGTAGAAGAGAAATGGAATGGGAGAAAGGGTTACCGGTTGATGAAGCTGAGGAAATGTGTATTGATATGGACTTATCATCTCCCTAG 2058 0.3727 VFPCVTANCGHYYHPECVTRLLSSSIDTEQEEMRKRVAIAKAFVCPLHICSSCKKGENKNVHDLQLAICRRCPKAYHRKCLPKEISFTFDYDKGIEQRAWDGLLDHRILIYCMDHEIDTELGTPARNHLVFPNVKVKRKIIDYKLLGKGKDTIKLGQSFDDLPSKKTLVPNQVTKRSVSIQGGGSAKDMEKIYFKKDICFSSGSVKFDMNRKYLKVKKVSALNSSLPNPAKKLPLKNTSLSCNSRLHEAKPLQRKLVGGRIGKTGLEKPLVKKVKTSLNFNNGDMENSILSLMKKSMSAFNEEKFKKNHQVFSTASCFTETIFDKNLTQGKIEGLIKAIQTALQRLEEGCSIEEAKTICDPAVVHQLFIWQKRLKVYLAPFLHGMRYTSFGRHFTKVDKLNEVVNRLHWYVQNGDMVLDFCCGSNDFSCLMKSKLEQMGKLCSFKNYDLFQPKNDFNFERRDWMSVNADELPNGSQLIIGLNPPFGVKGCLANKFIDKALTFKPKILILIVPKVTKRLDRKKGGYDLIWEDDDMFSGKSFYLPGSLDIRDKQLEDWNLKPPPLYLWSRPDWTTRHRKIAQKHCHTNGKYDVHVKGKYVKNYLMEENHDCYQDYPGLHAPGDVLSIIDGVLDDNGDNVHQQGATSISLGQLKETVISDCRREMEWEKGLPVDEAEEMCIDMDLSSP 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01487 685 CDD PHD3_NSD 50 84 - -
Cca01g01487 685 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 95 IPR013083 -
Cca01g01487 685 PANTHER EDM2-LIKE PROTEIN1 1 624 - -
Cca01g01487 685 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 384 494 IPR029063 -
Cca01g01487 685 PANTHER PHD FINGER-CONTAINING PROTEIN DDB_G0268158 1 624 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01487 Cca-Chr1 31692085 31700783 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01487 - - gmx:100810533 1087.79