Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01478 ATGGATATCGGGACAATGGAATTCTCAAACAACAACGAAGTTGACTATGATAGAGCAAGTGATCTCAAAGCATTTGATAACACAAAAGATGGTGTTAAAGGACTTGTTGATGCTGGGGTCACAAAGATTCCTCGCATATTCCATCACCCCCTTCTTCATCAAGATTCAGATAATTCATGTGGCACACAACTCAGTGTTCCTTCAATAGATCTTGATGGTGTTGGTGAAGATCCAGCAAGGAGGAAGGTGGTGGTCGAGAAAATCAGAGAAGCATCTGAAACATGGGGTTTCTTCCAAGTTGTTAATCATGGAATAGCAATGAGTGTTCTAGAGGAGATGAAGAGTGGAGTGAATGGTTTCTATGAGCAAGATTCTGAGGTCAAAAGGGGACTATACACACGTGATCCTTTGAGGCCTTTGGTGTACAATAGCAACTTTGATCTTTATAGTGCACCAGCAGCTAATTGGAGGGATACCTTTTACTGCTTCATGGCTCCTCATCCACCAAAACCACAAGACTTGCCATCAGTGTGCAGAGATATACTGGTGGAATACTCAAAACAAGTCAGAAACCTGGGAGGTGTGTTATTTGAGTTATTATCAGAAGCCCTTGAGCTGAATCCAAGCCATTTGAATGACATTGGTTGCAATGAGGGACTTGTAGTTGTTTGTCATTGCTACCCTGCTTGTCCAGAACCAGAATTGACACTTGGTGCAACCAAGCATGCTGATGATAGCTTCATCACTGTGCTTCTACAAGATCATATTGGTGGCCTCCAAGTTCTTCATGAAAACAAGTGGGTGGATGTGTCACCTCTACCTGGTGCTCTAGTAGTCAACATTGGTGATCTTCTACAACTTATAACAAATGACAAATTCAAGAGTGTTGAGCACAGAGTGGTGGCAAACCGTGTAGGTCCAAGAGTATCAGTTGCAAGCTTTTTTAGCACAAGTCTTCAGCCATCAACAAAGCTTTATGGTCCCATAAAGGATTTATTATCAGAAGATAATCCTCCTAAATACAGGGAAACCACAGTGTGTGACTATGTTTCCTACGCCTTTGCAAGAGGCCTTGATGGAACTTCTCCTCTGCCACATTTCAGGATCAAATATCTCTGA 1119 0.4227 MDIGTMEFSNNNEVDYDRASDLKAFDNTKDGVKGLVDAGVTKIPRIFHHPLLHQDSDNSCGTQLSVPSIDLDGVGEDPARRKVVVEKIREASETWGFFQVVNHGIAMSVLEEMKSGVNGFYEQDSEVKRGLYTRDPLRPLVYNSNFDLYSAPAANWRDTFYCFMAPHPPKPQDLPSVCRDILVEYSKQVRNLGGVLFELLSEALELNPSHLNDIGCNEGLVVVCHCYPACPEPELTLGATKHADDSFITVLLQDHIGGLQVLHENKWVDVSPLPGALVVNIGDLLQLITNDKFKSVEHRVVANRVGPRVSVASFFSTSLQPSTKLYGPIKDLLSEDNPPKYRETTVCDYVSYAFARGLDGTSPLPHFRIKYL 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01478 372 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 216 318 IPR005123 -
Cca01g01478 372 SUPERFAMILY Clavaminate synthase-like 29 360 - -
Cca01g01478 372 PANTHER OXIDOREDUCTASE, 2OG-FE II OXYGENASE FAMILY PROTEIN 9 369 - -
Cca01g01478 372 PANTHER 1-AMINOCYCLOPROPANE-1-CARBOXYLATE OXIDASE-LIKE PROTEIN 9 369 - -
Cca01g01478 372 Gene3D - 22 352 IPR027443 -
Cca01g01478 372 Pfam 2OG-Fe(II) oxygenase superfamily 218 316 IPR044861 -
Cca01g01478 372 Pfam non-haem dioxygenase in morphine synthesis N-terminal 66 168 IPR026992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01478 Cca-Chr1 31238442 31241570 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01478 12 369 Glycosyltransferase AT5G59530 57.064 2.97e-153 434
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01478 - - gmx:100777564 634.795