Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01456 ATGACGAGCATGGAGAGCTTGATCGGGTTGGTGAACAGAATCCAGCAAGCGTGCACCGTGCTCGGAGACTACGGCGCCGCCGACAACGACACTTTCTCTTCGCTCTGGGAAGCTCTTCCCTCCGTCGCCGTCGTCGGCGGCCAGAGTTCGGGTAAGTCTTCGGTTTTGGAAAGTATCGTTGGACGTGACTTTCTCCCCAGGGGATCCGGGATTGTGACGAGGCGTCCGTTGGTGTTGCAGCTTCACAAGGTTGACGGTGAAGCGAAGGAGTATGCAGAGTTTCTTCACATGCCAGGGAGAAAGATAACCGATTATGCTTTTGTCCGGCAGGAAATTCAAAATGAAACTGATAGAGTAACGGGAAGGACAAAACAAATATCTCCTGTTCCAATTCATCTAAGTATTTATTCTCCACATGTTGTCAACCTAACACTGATTGATTTACCTGGATTGACTAAAGTTGCTATAGAGGGACAGCCTGAGACTATTGTTGAAGACATTGAAAATATGGTTCGATCTTATGTTGAGAAGCCTAATTGTATTATACTGGCAATATCTCCAGCCAACCAAGACATAGCAACTTCTGATGCTATTAAACTTTCAAGGGAGGTGGATCCCTCAGGTGAGAGGACATTTGGAGTGTTGACAAAGCTGGATTTAATGGACAAAGGAACTAATGCGTTGGATGTCCTTGAAGGTAGATCTTACCGTTTGCAACATCCCTGGGTTGGTATAGTAAATCGATCCCAAGCAGATATCAATAAAAATGTTGATATGATTGTTGCTAGACGTAAGGAGCGTGAGTATTTTGAAACCAGTCCTGACTATGGGCATTTAGCCAATAAAATGGGTTCCGAATACCTTGCAAAACTTCTCTCACAGCATTTGGAATCAGTAATTAGGGCGCGTATACCTAATATAACATCTTTGATAAACAAAACTATTGAAGAACTTGAATCAGAGATGGATCATATTGGGAGGCCAATTGCTGTTGATGCTGGGGCCCGACTATACACCATCCTAGAACTTTGCCGTGCATTTGATCGGATATTCAAGGAGCATTTAGATGGAGGGCGGCCAGGAGGAGATAGGATATATAATGTCTTTGACAATCAGCTTCCTGCTGCTTTACGGAAGCTTCCATTTGACCGACATCTTTCTCTTCAAAATGTAAGGAAAGTGGTATCAGAGGCAGATGGTTACCAGCCTCACTTAATTGCGCCAGAGCAAGGTTACCGGCGCCTGATTGAGGGAGCTCTCAGCTACTTTAGGGGTCCAGCTGAAGCTTCAGTTGATGCAGTCCACTTTGTCTTAAAAGAACTTGTGAGGAAATCAATAGCTGAAACTCAGGAACTAAGACGTTTCCCAACTCTTCAAGCCGAAATATCTGCAGCTACAAATGAGGCTTTAGAGAGGTTCCGTGAAGAGAGTAAGAAGACAGCTATTCGACTTGTGGACATGGAAGCTTCATATCTCACTGTGGAATTCTTTCGGAGACTTCCTCAAGAAATGGAGAAAGCTGGAAATCCAGCTAATCAAGCTACCCCAAATATCGATCGATATGGAGAAGGGCATTACAGAAGGATTGGATCAAATGTATCTTCCTATATCGGTATGGTGTCAGACACTCTCAGGAACACTATTCCAAAGGCCGTGGTTTTTTGTCAGGTCAGAGAAGCAAAAATGTCATTGCTAAACCATTTCTACACACAAATTGGGAAGAAAGAGGCTAAACAACTATCACAGTTGTTAGATGAAGACCCTGCCTTGATGGAGAGGAGGCAACAATGTGCTAAAAGGCTTGAACTATATAAAGCAGCTAGGGATGAAATTGATTCTGTTTCTTGGGGACGATGA 1857 0.4405 MTSMESLIGLVNRIQQACTVLGDYGAADNDTFSSLWEALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKVDGEAKEYAEFLHMPGRKITDYAFVRQEIQNETDRVTGRTKQISPVPIHLSIYSPHVVNLTLIDLPGLTKVAIEGQPETIVEDIENMVRSYVEKPNCIILAISPANQDIATSDAIKLSREVDPSGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINKNVDMIVARRKEREYFETSPDYGHLANKMGSEYLAKLLSQHLESVIRARIPNITSLINKTIEELESEMDHIGRPIAVDAGARLYTILELCRAFDRIFKEHLDGGRPGGDRIYNVFDNQLPAALRKLPFDRHLSLQNVRKVVSEADGYQPHLIAPEQGYRRLIEGALSYFRGPAEASVDAVHFVLKELVRKSIAETQELRRFPTLQAEISAATNEALERFREESKKTAIRLVDMEASYLTVEFFRRLPQEMEKAGNPANQATPNIDRYGEGHYRRIGSNVSSYIGMVSDTLRNTIPKAVVFCQVREAKMSLLNHFYTQIGKKEAKQLSQLLDEDPALMERRQQCAKRLELYKAARDEIDSVSWGR 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01456 618 Pfam Dynamin family 42 217 IPR045063 -
Cca01g01456 618 ProSiteProfiles GED domain profile. 526 618 IPR020850 -
Cca01g01456 618 SMART GED_2 521 614 IPR003130 GO:0003924|GO:0005525
Cca01g01456 618 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 36 305 IPR030381 GO:0005525
Cca01g01456 618 PRINTS Dynamin signature 39 57 IPR022812 -
Cca01g01456 618 PRINTS Dynamin signature 64 81 IPR022812 -
Cca01g01456 618 PRINTS Dynamin signature 137 154 IPR022812 -
Cca01g01456 618 PRINTS Dynamin signature 187 205 IPR022812 -
Cca01g01456 618 PRINTS Dynamin signature 206 222 IPR022812 -
Cca01g01456 618 PRINTS Dynamin signature 229 248 IPR022812 -
Cca01g01456 618 Pfam Dynamin GTPase effector domain 523 614 IPR003130 GO:0003924|GO:0005525
Cca01g01456 618 ProSitePatterns Dynamin-type guanine nucleotide-binding (G) domain signature. 65 74 IPR019762 -
Cca01g01456 618 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 29 313 IPR027417 -
Cca01g01456 618 Gene3D Dynamin, middle domain 331 584 - -
Cca01g01456 618 Pfam Dynamin central region 226 493 IPR000375 -
Cca01g01456 618 PANTHER DYNAMIN 1E-LIKE PROTEIN 3 617 - -
Cca01g01456 618 PANTHER DYNAMIN 3 617 IPR022812 -
Cca01g01456 618 SMART dynamin_3 4 256 IPR001401 GO:0003924|GO:0005525
Cca01g01456 618 Gene3D - 4 314 IPR027417 -
Cca01g01456 618 CDD DLP_1 39 305 IPR001401 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01456 Cca-Chr1 30340487 30347927 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01456 - - gmx:100790977 1166.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g01456 01 30340487 30347927 Cca01g01456 01 30340487 30347927 ECH