Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01443 ATGTTTCCAAACGCCATGTCCACTCTGCTTCACTCCCCTCCCGCTTCTTCCCCTTCCTTCTCTCAGATCACCACTCCTCGCTTCGCTCCTTCGCCTCGCATCTCCCTCCGAAACGGCGTCCGTTGCAGGGCCGTGGACGCAGTGAAGCTGGAGAATGGGAGGCCAAGTGCGAGCGAGTTTGTCGTCACCGGAAGCGGAAGCGGAAGCGCTATTCCGAGCTTCGTCGTGGCGCCAAACGCGCGTATTCAGGATTTGGTTAACCGGAACGACACTCGCCTTCGGATATTTTCCGGCACCGCTAATCCGGCGCTCGCTCAGGAAATTGCGTGCTACCTGGGCCTGGAGCTAGGAAAAATTAAGATAAAGCGTTTTGCTGATGGTGAGATATATGTTCAGTTGCAAGAGAGTGTCAGGGGCTGTGATGTGTTTCTTGTGCAGCCCACATGCCCTCCTGCGAATGAGAATCTTATGGAGCTTCTCATAATGATTGATGCCTGCAGGAGGGCTTCAGCCAAAAATATTACTGCTGTCATTCCGTATTTTGGATATGCCAGAGCTGATAGAAAGACTCAAGGGCGTGAATCCATTGCTGCCAAACTTGTAGCAAATTTAATTACAGAAGCAGGTGCAAATCGTGTACTTGCTTGTGACCTCCATTCTGGGCAGTCAATGGGCTATTTTGATATTCCAGTTGATCATGTGTATGGACAGCCTGTTATTCTTGATTACCTTGCCAGCAAGACTATTTGTTCCGACGATTTGGTAGTTGTCTCGCCAGATGTTGGTGGTGTTGCTAGAGCACGAGCTTTTGCAAAAAAATTATCCGATGCTCCTTTAGCTATTGTTGATAAAAGGCGCCATGGGCATAATGTTGCTGAGGTGATGAATTTGATAGGTGATGTAAGGGGAAAGGTAGCAGTTATGGTAGATGACATGATTGATACTGCTGGGACTATTGCCAAAGGTGCAGCTCTTTTGCATCAAGAAGGGGCAAGAGAAGTCTATGCATGCTCTACACATGCTGTTTTCAGTCCTCCTGCTATTGAGAGGTTGTCAAGTGGTTTGTTCCAAGAAGTTATCATAACTAATACGATTCCAGTGGCAGAACAGAACTATTTTCCCCAATTAACTGTCCTATCAGTGGCAAACCTTCTGGGCGAGACTGTATGGCGTGTTCATGATGATTGCTCAGTGAGTAGCATATTTCTGTAA 1212 0.4769 MFPNAMSTLLHSPPASSPSFSQITTPRFAPSPRISLRNGVRCRAVDAVKLENGRPSASEFVVTGSGSGSAIPSFVVAPNARIQDLVNRNDTRLRIFSGTANPALAQEIACYLGLELGKIKIKRFADGEIYVQLQESVRGCDVFLVQPTCPPANENLMELLIMIDACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGANRVLACDLHSGQSMGYFDIPVDHVYGQPVILDYLASKTICSDDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVRGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACSTHAVFSPPAIERLSSGLFQEVIITNTIPVAEQNYFPQLTVLSVANLLGETVWRVHDDCSVSSIFL 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01443 403 TIGRFAM ribP_PPkin: ribose-phosphate diphosphokinase 94 402 IPR005946 GO:0000287|GO:0004749|GO:0009165
Cca01g01443 403 PANTHER RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 2, CHLOROPLASTIC 51 403 - -
Cca01g01443 403 PANTHER RIBOSE-PHOSPHATE DIPHOSPHOKINASE FAMILY MEMBER 51 403 IPR005946 GO:0000287|GO:0004749|GO:0009165
Cca01g01443 403 Pfam N-terminal domain of ribose phosphate pyrophosphokinase 93 209 IPR029099 -
Cca01g01443 403 MobiDBLite consensus disorder prediction 9 24 - -
Cca01g01443 403 Gene3D - 236 379 IPR029057 -
Cca01g01443 403 SUPERFAMILY PRTase-like 158 394 IPR029057 -
Cca01g01443 403 Pfam Phosphoribosyl synthetase-associated domain 294 402 IPR005946 GO:0000287|GO:0004749|GO:0009165
Cca01g01443 403 MobiDBLite consensus disorder prediction 1 24 - -
Cca01g01443 403 SMART Pribosyltran_N_2 93 209 - -
Cca01g01443 403 ProSitePatterns Phosphoribosyl pyrophosphate synthase signature. 217 232 IPR000842 GO:0000287|GO:0004749|GO:0009156|GO:0044249
Cca01g01443 403 Gene3D - 96 394 IPR029057 -
Cca01g01443 403 CDD PRTases_typeI 252 364 IPR000836 -
Cca01g01443 403 Hamap Putative ribose-phosphate pyrophosphokinase [prs]. 93 403 IPR037515 GO:0004749
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01443 Cca-Chr1 29814315 29825129 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01443 K00948 - gmx:100816430 733.021