Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01422 ATGACACAAATAGTTTTAAATGCTGTAGTATATTTTCTTCTATTCACGCTTACATCGGTTATAATCGAGGGGGTAACTTTAAATGTTGTCGATTTTGGGGCAAAACCTGATGGTGAAACTGACTCCACAAATGCATTACTGAGTGCATGGGGTAGAGCATGCAGCTCAACATCACCAACCACCATTTTTGTGCCCTTAGGAAGGTTCTTAGTTGGTAAGGTAGTTTTCAAGGGGAGGTGCAACAACAAGGGCATCACAATACACATTGATGGTGCACTAGTTGCACCTTCCAAATATGATGTTATTGGAAACGCTGAAAATTGgttgttttttgatgatgttgatggtgtttcggtgattggtggtgttcttgatgGCCAAGGCACAGACTTGTGGGCATGTAAGAGGTCTGCCAAGTCTTGCCCAATTGGTGCTACGAACATGGGATTTACCAATTCAAACAACATAGTTATCAACGGAGTGACCTCTTTGAATAGCCAAATGTTCCATATAGTTATTGACCGATGTGATAGTGTGAAAATACAAGGTGTTAAGATATTTGCTGCAGGAAACAGTCCTAACACTGATGGCATTCATGTTCAACTCTCATCAAGTGTAAACATTCTTAACTCAAATATAGCAACCGGTGATGATTGCATTTCAATTGGACCTGGAACTACTAATTTGTGGATACAAAACATAGCTTGCGGACCAGGTCATGGAATAAGTGTTGGAAGTTTAGGCAAAGAATTTCAAGAGGCTGGCGTGCAAAATGTGACAGTTAAAACAGTCACATTTACTGGAACAGAAAATGGTGTACGAATTAAGTCTTGGGGGAGACCTAGCAATGGGTATGCAAGGAAGATCCTTTTCCAACATGTTACCATGGTTAATGTCCAAAATCCCATTGTGATCGACCAAAATTATTGTCCCAATGAGAAAAATTGTCCGAGTCAGGTTTCCGGGGTTGAAATTAGCAACGTTATATACCAAGATATTCATGGAACCTCAACAACAGCAATTGCAGTCAAAATGAATTGTAGTCCAAAGAATCCATGCACTGGAATAAGATTGGAAGATGTGATGCTTACATATGAAAGCAAACAAGTCGTAGCTTCATGCAATCACGCTGGAGGAATCACATCTGGTGTAGTTCAGCCCAACAACTGTTTCTAG 1176 0.3852 MTQIVLNAVVYFLLFTLTSVIIEGVTLNVVDFGAKPDGETDSTNALLSAWGRACSSTSPTTIFVPLGRFLVGKVVFKGRCNNKGITIHIDGALVAPSKYDVIGNAENWLFFDDVDGVSVIGGVLDGQGTDLWACKRSAKSCPIGATNMGFTNSNNIVINGVTSLNSQMFHIVIDRCDSVKIQGVKIFAAGNSPNTDGIHVQLSSSVNILNSNIATGDDCISIGPGTTNLWIQNIACGPGHGISVGSLGKEFQEAGVQNVTVKTVTFTGTENGVRIKSWGRPSNGYARKILFQHVTMVNVQNPIVIDQNYCPNEKNCPSQVSGVEISNVIYQDIHGTSTTAIAVKMNCSPKNPCTGIRLEDVMLTYESKQVVASCNHAGGITSGVVQPNNCF 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01422 391 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 1 390 - -
Cca01g01422 391 Pfam Glycosyl hydrolases family 28 54 375 IPR000743 GO:0004650|GO:0005975
Cca01g01422 391 ProSitePatterns Polygalacturonase active site. 233 246 IPR000743 GO:0004650|GO:0005975
Cca01g01422 391 PANTHER - 1 390 - -
Cca01g01422 391 SUPERFAMILY Pectin lyase-like 10 391 IPR011050 -
Cca01g01422 391 SMART pbh1 203 224 IPR006626 -
Cca01g01422 391 SMART pbh1 286 307 IPR006626 -
Cca01g01422 391 SMART pbh1 226 246 IPR006626 -
Cca01g01422 391 SMART pbh1 176 202 IPR006626 -
Cca01g01422 391 SMART pbh1 256 277 IPR006626 -
Cca01g01422 391 SMART pbh1 320 360 IPR006626 -
Cca01g01422 391 Gene3D - 21 390 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01422 Cca-Chr1 29136826 29138544 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01422 9 388 Glycoside Hydrolase AT2G43870 61.942 0.0 507
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01422 K01184 - gmx:100784002 679.093