Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01420 ATGGCGCAAGTGAGGAACAAGCAAGTGGTTCTTAGGAACTATGTCACTGGTTTTCCCAAAGAATCCGACATGAAAATCGTTGAAGGGACCATAACTTTGAAGCTTCCAGAAGGTTCCAAAGAGGTTTTGCTAAAAAATCTCTACTTGTCTTGTGATCCATACATGCGACTCATCATGACCAAGGGCTCTGCTTCGGATTTAGGTGCCTTCACCCCTTCCTCTCCATTGACAGGATATGGTGTGTCTAAAGTCCTAGAATCCGGACACTCAGATTATAAGAAAGATGATTTAGTGTGGGGCTTTACTAAATGGGAAGAGTACAGCTTAGTCTCTTCAACTCAAATACTTTTTAAAATTGAGCACACTGATGTTCCACTTTCTTACTATACTGGAATTCTTGGTATGCCTGGGGTAACTGCTTATGTTGGTTTCTTTGAAATAGGCTCTCCTAAAAAAGGAGAGAATGTTTTCATTTCAGCTGCCTCTGGTGCAGTTGGTCAACTTGTTGGTCAGTTTGCAAAATTGACCGGTTGTTATGTTGTTGGAAGTGCTGGAAGTAAAGAAAAGGTGGATCTCTTGAAGAATAAATTTGGATTTGATGATGCCTTTAACTACAAAGAAGAACCAGATCTTGATGCTGCATTGAAAAGGTACTTCCCAGAAGGCATTGATATTTATTTTGAAAATGTGGGGGGAAAGACACTTGATGCTGTACTCTTGAATATGAGAGTTCATGGTCGCATACCTGTTTGTGGAATGATCTCACAGTATAATCTTACTCAATTAGATGGTATAACAAATTTAGCAAATATCATATTTAAGCGGGTTCGTATGGAAGGTTTTCTTGCAAATGATTTCTATCACTTATATCCCAAATTCTTGGAGTTTCTATTGCCTCACATTAGAGAAGGGAAGGTTGTGTATGTGGAAGACATTGTTGAGGGCCTTGAGAATGGCCCTACAGCCTTGGTTGGCCTCTTTAGTGGTCGCAATGTTGGTAAACAAGTGCTAGTTGTTGCTCGAGAATGA 1029 0.4004 MAQVRNKQVVLRNYVTGFPKESDMKIVEGTITLKLPEGSKEVLLKNLYLSCDPYMRLIMTKGSASDLGAFTPSSPLTGYGVSKVLESGHSDYKKDDLVWGFTKWEEYSLVSSTQILFKIEHTDVPLSYYTGILGMPGVTAYVGFFEIGSPKKGENVFISAASGAVGQLVGQFAKLTGCYVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDAALKRYFPEGIDIYFENVGGKTLDAVLLNMRVHGRIPVCGMISQYNLTQLDGITNLANIIFKRVRMEGFLANDFYHLYPKFLEFLLPHIREGKVVYVEDIVEGLENGPTALVGLFSGRNVGKQVLVVARE 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01420 342 SMART PKS_ER_names_mod 42 337 IPR020843 GO:0016491
Cca01g01420 342 PANTHER PROSTAGLANDIN REDUCTASE 1 342 IPR045010 GO:0016628
Cca01g01420 342 CDD double_bond_reductase_like 4 339 - -
Cca01g01420 342 SUPERFAMILY GroES-like 286 337 IPR011032 -
Cca01g01420 342 Pfam Zinc-binding dehydrogenase 164 297 IPR013149 -
Cca01g01420 342 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 131 302 IPR036291 -
Cca01g01420 342 PANTHER NADP-DEPENDENT ALKENAL DOUBLE BOND REDUCTASE 1 342 - -
Cca01g01420 342 Pfam N-terminal domain of oxidoreductase 7 114 IPR041694 -
Cca01g01420 342 Gene3D - 132 308 - -
Cca01g01420 342 Gene3D - 9 336 - -
Cca01g01420 342 SUPERFAMILY GroES-like 3 169 IPR011032 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01420 Cca-Chr1 29003193 29007781 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01420 K19825 - gmx:100811802 592.038