Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01418 ATGTTTGGTATCATATCATGGATAGGACAAGTCTTCAAGTTACTCGGTAAGGAGTGGAGGAAAAGACAAATAAGAACGATAACAGATCAAGTTTTTGACATAGTAAAGAATCAAGAGGAAACTGTTAATTTGACTTTTGGGGATCTGTATATTGCTGTTTTACTTGTGTACAATGGTATCAACAAGTATATTCCTGGTCCCCATTTTGATCCTCCATCAAAAGAAAGAGTCAGAGAAGTCATCGAGGAGTGTGATATCAACTCAGATAGTCAAATTGACCGAGACGAATTTTTTGATTTCATCGAGAAAATGGCACCCGAAACATTCTATGTTGTTCATAAAAAACTTATTGCCACTTTGGTTGTAGCACCAACAGTTGCAGCAACAACAAAGAAAGCCACTGAAGGTGTCCCAGGGGTTGGGAAACTGGTGCAAAGATTACCCAAACTACTTTATACTGCCCTTATGACAATTGCAGCTGTGTGGTTCCAAGAGAGTGGTCAAAATTCTGCACTCTAG 519 0.3892 MFGIISWIGQVFKLLGKEWRKRQIRTITDQVFDIVKNQEETVNLTFGDLYIAVLLVYNGINKYIPGPHFDPPSKERVREVIEECDINSDSQIDRDEFFDFIEKMAPETFYVVHKKLIATLVVAPTVAATTKKATEGVPGVGKLVQRLPKLLYTALMTIAAVWFQESGQNSAL 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01418 172 PANTHER CALCIUM-BINDING EF HAND PROTEIN 11 169 - -
Cca01g01418 172 PANTHER S100 CALCIUM-BINDING PROTEIN 11 169 - -
Cca01g01418 172 SUPERFAMILY EF-hand 68 113 IPR011992 -
Cca01g01418 172 Gene3D - 21 117 - -
Cca01g01418 172 ProSiteProfiles EF-hand calcium-binding domain profile. 72 107 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01418 Cca-Chr1 28976554 28978917 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01418 8 162 EF-hand Containing Proteins AT1G64850 60.897 8.48e-67 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01418 - - vun:114167513 220.32