Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01417 ATGGGACAAGTCTTTGACAAGTTAGAGGGTAAGGAGTGGAGGAAAAGGCAAATAAGGAAGATAACAGATAGAGTTTTTGAGAAAGTACAGAATCAAAAGCAAACTGATAAATTGAGTTTTGAAGATCTGTATATTTCTGTTTTACTTGTGTACAATGATATTAACAAGTACATTCCTGGTCCCCATTTTGATCCTCCATCAAAACAAAAAGTCAAAGAAGTCATCGAGAGCTGTGATATCAACTTTGATGGGGAGATTGACCGTGATGAATTTTTCGATTTCATCTTGCAAATGACAGCTGATACATTCACTGTTGTTAGCCAAAAACTTATTGTCACTCTGGTTGTAGCACCAACAGTTGCAGTGGCAACAAAGAAAGCTACTGAAGGGGTTCCAGGTGTTGGGAGACTGGTGCAAAGGATACCCAATTCAATTTATGCTTCCCTTGTGACAATTGCAGCTGTGTGGTTCCAGAAAAAGGCTCATGAATCTGCACTGTAG 501 0.3912 MGQVFDKLEGKEWRKRQIRKITDRVFEKVQNQKQTDKLSFEDLYISVLLVYNDINKYIPGPHFDPPSKQKVKEVIESCDINFDGEIDRDEFFDFILQMTADTFTVVSQKLIVTLVVAPTVAVATKKATEGVPGVGRLVQRIPNSIYASLVTIAAVWFQKKAHESAL 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01417 166 SUPERFAMILY EF-hand 24 99 IPR011992 -
Cca01g01417 166 ProSiteProfiles EF-hand calcium-binding domain profile. 66 101 IPR002048 GO:0005509
Cca01g01417 166 Gene3D - 1 104 - -
Cca01g01417 166 PANTHER CALCIUM-BINDING EF HAND PROTEIN 4 163 - -
Cca01g01417 166 PANTHER S100 CALCIUM-BINDING PROTEIN 4 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01417 Cca-Chr1 28926714 28932249 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01417 1 156 EF-hand Containing Proteins AT1G64850 66.026 1.51e-78 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01417 - - gmx:100526914 277.33