Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01414 ATGGCGTTGTTGAGTGGTGGCAAGGTTATTGCTCCTCCCATCTTCCACCACTCTCACACCCCTCGACCCTTCTTCTTCTTCCGACGACGCCGTTTCACAGTCTCTGCTCTCTCCGAACAATCACCTCTTCCCGTTCGCGTTCGTTTCGCTCCTTCTCCCACTGGAAACCTCCACGTTGGTGGTGCCCGAACGGCCCTCTTCAACTACTTGTTCGCCAGGTCCAAAGGTGGGAAATTTGTGCTGAGGATTGAGGACACTGACTTGGAGAGGTCCACAAGGGAGTCTGAGGAGGCCATGCTCAAGGATCTTTCCTGGCTTGGACTTGATTGGGATGAAGGGCCTGGTGTTGGAGGGGATTATGGACCATATAGGCAGTCTGAGAGGAATTCTTTGTACAAACAATATGCAGAGAACCTACACCAATCTGGTCATGTTTATCGCTGCTTCTGTTCTAATGAGGAACTAGAGAAAATGAAGGAGGATGCTAAACTAAAGCAACTGCCTCCAGTGTACACTGGTAGATGGGCCAGTGCAACAAACAACGAAGTAGAAGAAGAGCTGTCTAAAGGAACTCCTTATACATACCGGTTTCGTGTCCCTAAAGGAAGTTTAAAAATTAATGACCTAATACGAGGCGAAGTTAGTTGGAACTTGGATACGCTTGGAGATTTTGTGATAATGAGGAGTAATGGTCAGCCTGTTTATAACTTTTGTGTAACGGTGGATGATGCTACCATGGCTATTTCCCATGTTATCAGAGCTGAGGAGCATTTACCAAACACTCTAAGACAGGCCTTAATATATAAGGCACTAGGATTTCCCATGCCTTACTTTGCACATGTTTCCTTGATTTTAGCTCCTGATCGGAGTAAATTATCAAAACGACATGGGGCAACATCAGTGGGTCAGTTCCGGGAGATGGGATACCTACCTGAAGCAATGGTGAATTACCTAGCATTATTAGGTTGGGGCGATGGAACTGAAAATGAGTTTTTTACACTTGATCAACTTGTTGAAAAATTCACAATCGAACGTGTTAACAAAAGTGGTGCTATTTTTGACTCAACTAAGTTAAGGTGGATGAATGGTCAGCATTTAAGAGCACGTCCATCAGAGGAGTTGACCAAACTTATTGGAGAGTACTGGAAGACATCTGGCTTACTCACAGTATCAGAAGGGCCCTTTATTGATGAAGCAGTTCAACTACTTAAGGATGGGATTGACTTGACAAATGATGCAGACAAGGCCCTTACTAACTTGCTTTCTTATCCTTTACATTCTACTTTACAGAGCGATGAAACAGAATCTGTCTTGCAAGATAATCTTTCTGAATTTGCTGCTAGCCTCTTGGCTGCCTATGATAGTGGTGATCTGGTAGCAGCACTTGAAGAGGGCCATGCTGGCTGGCAAAAGTGGGTGAAAGGCTTCGGAAAATCGCTAAAGCGCAAGGGAAAATCACTTTTCATGCCCCTTCGACTTCTGTTGACTGGAAAACTCCATGGACCTGACATGGGGGCAAGTGTTGTGCTACTATATAAAGCTGGCACTAGTGATGTAGTAGCTCCTGAAGCTGGATCAACCAGTCAAAGAGACTGCTGCTCCTGTCTAACTGAGCATTCACTTTCAAGGATATTTAGCTGTTTTACTACAATGCATGCTTCCATTGATCACTTGTGTGTGTCCACACACGTGAAAGACCTTTCTGCAGTAATCAAAAGAATGTCTGAAGCGATGCCCTTGAGCAGAAGCACATGA 1755 0.449 MALLSGGKVIAPPIFHHSHTPRPFFFFRRRRFTVSALSEQSPLPVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTRESEEAMLKDLSWLGLDWDEGPGVGGDYGPYRQSERNSLYKQYAENLHQSGHVYRCFCSNEELEKMKEDAKLKQLPPVYTGRWASATNNEVEEELSKGTPYTYRFRVPKGSLKINDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGFPMPYFAHVSLILAPDRSKLSKRHGATSVGQFREMGYLPEAMVNYLALLGWGDGTENEFFTLDQLVEKFTIERVNKSGAIFDSTKLRWMNGQHLRARPSEELTKLIGEYWKTSGLLTVSEGPFIDEAVQLLKDGIDLTNDADKALTNLLSYPLHSTLQSDETESVLQDNLSEFAASLLAAYDSGDLVAALEEGHAGWQKWVKGFGKSLKRKGKSLFMPLRLLLTGKLHGPDMGASVVLLYKAGTSDVVAPEAGSTSQRDCCSCLTEHSLSRIFSCFTTMHASIDHLCVSTHVKDLSAVIKRMSEAMPLSRST 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01414 584 PRINTS Glutamyl-tRNA synthetase signature 233 243 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Cca01g01414 584 PRINTS Glutamyl-tRNA synthetase signature 48 60 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Cca01g01414 584 PRINTS Glutamyl-tRNA synthetase signature 62 73 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Cca01g01414 584 PRINTS Glutamyl-tRNA synthetase signature 77 90 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Cca01g01414 584 PRINTS Glutamyl-tRNA synthetase signature 249 257 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Cca01g01414 584 Pfam tRNA synthetases class I (E and Q), catalytic domain 45 360 IPR020058 GO:0004812|GO:0005524|GO:0043039
Cca01g01414 584 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 51 62 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Cca01g01414 584 SUPERFAMILY An anticodon-binding domain of class I aminoacyl-tRNA synthetases 354 513 IPR008925 GO:0000049
Cca01g01414 584 PANTHER GLUTAMATE--TRNA LIGASE, MITOCHONDRIAL-RELATED 40 514 - -
Cca01g01414 584 Hamap Glutamate--tRNA ligase [gltX]. 44 548 IPR004527 GO:0000166|GO:0004818|GO:0005524|GO:0006424
Cca01g01414 584 Gene3D HUPs 36 369 IPR014729 -
Cca01g01414 584 SUPERFAMILY Nucleotidylyl transferase 45 353 - -
Cca01g01414 584 CDD GluRS_core 45 367 IPR033910 GO:0006424|GO:0008270
Cca01g01414 584 PANTHER GLUTAMATE--TRNA LIGASE 40 514 - -
Cca01g01414 584 Gene3D - 426 518 IPR020751 -
Cca01g01414 584 Pfam Anticodon binding domain 376 512 IPR045462 -
Cca01g01414 584 TIGRFAM gltX_bact: glutamate--tRNA ligase 45 513 IPR004527 GO:0000166|GO:0004818|GO:0005524|GO:0006424
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01414 Cca-Chr1 28797231 28805560 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01414 K01885 - gmx:100810730 972.615