Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01413 ATGCGCACAAGTGATGCAAATTATCTGTCAGAGTCATATATATTCTATGAAGCCATATTGACCCGGGAGTATTTTAAGGAGGGGTTATTTCAAGACGTGAATATTGCAAACAAACAATTGAGGTTTCTTGCTAGATTCATAATGGTGTGTTTGGTTTTGAACCGAAGGGAAATGGTGCAGCAATTGGTTAATCAGCTTAAAGTGTTAGTTGATGAATGCAAGAGAACATTCCAGGAAAGTGACTTTAAAGAATGGAAGCTGGTGGTTCAGGAAATAGTCAGATTTTTAAAAGCTGACACTGCTTTTATGAATATCAGGCCCTTGAGATACAGTCTAGTTTTGGACCCTCATCCCGATACTTTACAGCATGTTGCTGCTGCCATCACAAAGCGACATTTGAGACTACGAGATGCTGTATTAAGTAGCTTCCATCTAAATGAGGTAAAGTATTCAGAACTCACGATTGACACTTTTAGGATGCTTCAATGTTTGGAGTGGGAACCTAGTGGCTCATTTTACCAGTCTAGTGGTTCAAAACTTAGTCAGAATGGGGCTACTGGGACTAGTCGTATTAGTTACATCCAAGACATTGCTGATCCTACCTTACCAGCAAACCCACGAAAAGCTGTGTTATACCGTCCTTCACTGACACATTTTATAGCTGTTCTTGCCACAATATGTGAGGAGCTTCCCCCTGATGGTATTCTCCTTGTGTATTTGTCGGCTTCAGGATCATATGGTGCTGCACAGAATGAATCTGGTTGCATACAATTTGGTCCTCGTGGAGATAGAGGATCAAACTGCATATATCCATCTGACTTTCTACCCTTTACTAGAAGACCACTTCTTTTAGTCATTGATAACGACAACAGCAAAGCTTTTAAGGTCATAGCAGAAGCAGAAAAGGGAGAGTCAGTTGCTATGCTCCTTTCTCCAAGCTGTTCACCTGCTGTGTCTGATTACTCATATAATTCAAATGGGAGCCTATTCACCATGTTTCTTACAGCTCCACTACAAGCTTTCTGTCTGCTGCTTGGACTTTCAGGCACTGATATTGATTTGGACACATTTAACAAAGCTGAAATGCTGCTCTCATCTTCATTAAATAACTGGGGACTAGCATTGGCAACATCAGACACACTTAATTCTGTTTGGGGACAAATTTTAGGTGATCCCTTCATAAGGAGACTTCTTTTGAGATTCATATTTTGCCAGGCAGTGTTGACCCTATATGCACCAGTTTACAATGAAAACAAGTTCCTTCCAACATGTGTCCCTTCTCTTCCGACACCTGTCCTGCCCCAAAGTTACTCATATCAGAGTGTAATTCTGAATTTAGCCAGCATGTTCGGTGCAACTAAGCATTTCATCTTCTCAGAGGATGTTCTTCCCAAAAATATACAAACCGACATGAATCAGTTAACTCTGTGA 1431 0.4074 MRTSDANYLSESYIFYEAILTREYFKEGLFQDVNIANKQLRFLARFIMVCLVLNRREMVQQLVNQLKVLVDECKRTFQESDFKEWKLVVQEIVRFLKADTAFMNIRPLRYSLVLDPHPDTLQHVAAAITKRHLRLRDAVLSSFHLNEVKYSELTIDTFRMLQCLEWEPSGSFYQSSGSKLSQNGATGTSRISYIQDIADPTLPANPRKAVLYRPSLTHFIAVLATICEELPPDGILLVYLSASGSYGAAQNESGCIQFGPRGDRGSNCIYPSDFLPFTRRPLLLVIDNDNSKAFKVIAEAEKGESVAMLLSPSCSPAVSDYSYNSNGSLFTMFLTAPLQAFCLLLGLSGTDIDLDTFNKAEMLLSSSLNNWGLALATSDTLNSVWGQILGDPFIRRLLLRFIFCQAVLTLYAPVYNENKFLPTCVPSLPTPVLPQSYSYQSVILNLASMFGATKHFIFSEDVLPKNIQTDMNQLTL 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01413 476 Pfam Protein SCAI 1 251 IPR022709 GO:0003714|GO:0006351
Cca01g01413 476 Pfam Protein SCAI 252 412 IPR022709 GO:0003714|GO:0006351
Cca01g01413 476 PANTHER TRANSDUCER, PUTATIVE (DUF3550/UPF0682)-RELATED 249 468 - -
Cca01g01413 476 PANTHER TRANSDUCER, PUTATIVE (DUF3550/UPF0682)-RELATED 1 248 - -
Cca01g01413 476 PANTHER PROTEIN SCAI 249 468 - -
Cca01g01413 476 PANTHER PROTEIN SCAI 1 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01413 Cca-Chr1 28786600 28797207 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01413 - - ccaj:109791878 941.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g01413 01 28786600 28797207 Cca01g01413 01 28786600 28797207 ECH